Analysis of interatomic Contacts of Structural Units in PDB entry:
8J8Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J8Z entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 8J8Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	LYS 357
H	VAL 5	VAL 121
L	SER 1	ILE 107
V	CYS 347	CYS 347
V	GLU 349	GLU 349
V	ILE 352	LEU 353
B	THR 6	LYS 357
I	VAL 5	VAL 121
M	SER 1	ILE 107
U	CYS 347	CYS 347
U	GLU 349	GLU 349
U	ILE 352	LEU 353

There are 13 helices in PDB entry 8J8Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	48	Right-handed 310
Helix 2	AA2	A	67	71	Right-handed 310
Helix 3	AA3	A	98	109	Right-handed alpha
Helix 4	AA4	A	159	161	Right-handed 310
Helix 5	AA5	H	65	68	Right-handed 310
Helix 6	AA6	H	90	94	Right-handed 310
Helix 7	AA7	B	65	69	Right-handed 310
Helix 8	AA8	B	90	94	Right-handed 310
Helix 9	AA9	B	98	109	Right-handed alpha
Helix 10	AB1	I	31	33	Right-handed 310
Helix 11	AB2	I	65	68	Right-handed 310
Helix 12	AB3	I	90	94	Right-handed 310
Helix 13	AB4	M	80	84	Right-handed 310

There are 24 sheets in PDB entry 8J8Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	117	first strand
Strand 2	A	37	42	anti-parallel
Strand 3	A	19	22	anti-parallel
Strand 4	A	8	12	anti-parallel
Strand 5	V	349	351	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	29	first strand
Strand 2	A	169	172	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	85	first strand
Strand 2	A	52	63	anti-parallel
Strand 3	A	141	151	anti-parallel
Strand 4	A	163	166	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	85	first strand
Strand 2	A	52	63	anti-parallel
Strand 3	A	141	151	anti-parallel
Strand 4	A	127	129	anti-parallel
Strand 5	A	288	290	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	190	first strand
Strand 2	A	193	203	anti-parallel
Strand 3	A	214	222	anti-parallel
Strand 4	A	266	274	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	343	351	parallel
Strand 3	A	317	328	anti-parallel
Strand 4	A	230	242	anti-parallel
Strand 5	A	246	248	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	343	351	parallel
Strand 3	A	317	328	anti-parallel
Strand 4	A	230	242	anti-parallel
Strand 5	A	251	258	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	10	first strand
Strand 2	H	20	27	anti-parallel
Strand 3	H	81	87	anti-parallel
Strand 4	H	71	76	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	14	first strand
Strand 2	H	118	120	parallel
Strand 3	H	95	96	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	63	first strand
Strand 2	H	48	55	anti-parallel
Strand 3	H	35	42	anti-parallel
Strand 4	H	99	103	anti-parallel
Strand 5	H	110	113	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	8	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	103	106	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	103	106	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	117	first strand
Strand 2	B	37	42	anti-parallel
Strand 3	B	19	22	anti-parallel
Strand 4	B	7	12	anti-parallel
Strand 5	U	348	352	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	164	172	parallel
Strand 3	B	141	150	anti-parallel
Strand 4	B	53	62	anti-parallel
Strand 5	B	76	85	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	164	172	parallel
Strand 3	B	141	150	anti-parallel
Strand 4	B	127	129	anti-parallel
Strand 5	B	288	290	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	188	first strand
Strand 2	B	197	203	anti-parallel
Strand 3	B	214	222	anti-parallel
Strand 4	B	266	274	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	343	351	parallel
Strand 3	B	317	327	anti-parallel
Strand 4	B	231	241	anti-parallel
Strand 5	B	250	258	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	7	10	first strand
Strand 2	I	20	27	anti-parallel
Strand 3	I	81	87	anti-parallel
Strand 4	I	71	76	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	13	14	first strand
Strand 2	I	118	120	parallel
Strand 3	I	95	96	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	60	63	first strand
Strand 2	I	49	55	anti-parallel
Strand 3	I	35	41	anti-parallel
Strand 4	I	98	103	anti-parallel
Strand 5	I	110	113	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	5	8	first strand
Strand 2	M	20	26	anti-parallel
Strand 3	M	71	76	anti-parallel
Strand 4	M	63	68	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	13	first strand
Strand 2	M	103	106	parallel
Strand 3	M	86	91	anti-parallel
Strand 4	M	34	39	anti-parallel
Strand 5	M	46	50	anti-parallel
Strand 6	M	54	55	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	13	first strand
Strand 2	M	103	106	parallel
Strand 3	M	86	91	anti-parallel
Strand 4	M	98	99	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J8Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J8Z