Analysis of interatomic Contacts of Structural Units in PDB entry:
8J90

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J90 entry

There are 11 chains in PDB entry 8J90 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 61	ARG 134
B	ARG 23	GLY 101
C	LYS 26	HIS 113
D	GLU 60	SER 149
E	GLU 59	ALA 135
F	ARG 19	GLY 102
G	LEU 32	HIS 113
H	GLU 60	SER 149
I	G -60	A 50
J	T -50	C 60
K	GLU 184	MET 758

There are 57 helices in PDB entry 8J90. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	63	79	Right-handed alpha
Helix 2	AA2	A	85	114	Right-handed alpha
Helix 3	AA3	A	120	132	Right-handed alpha
Helix 4	AA4	B	24	29	Right-handed 310
Helix 5	AA5	B	30	41	Right-handed alpha
Helix 6	AA6	B	49	76	Right-handed alpha
Helix 7	AA7	B	82	93	Right-handed alpha
Helix 8	AA8	C	26	30	Right-handed 310
Helix 9	AA9	C	35	47	Right-handed alpha
Helix 10	AB1	C	55	82	Right-handed alpha
Helix 11	AB2	C	88	99	Right-handed alpha
Helix 12	AB3	C	99	106	Right-handed alpha
Helix 13	AB4	D	62	74	Right-handed alpha
Helix 14	AB5	D	80	109	Right-handed alpha
Helix 15	AB6	D	115	127	Right-handed alpha
Helix 16	AB7	D	128	149	Right-handed alpha
Helix 17	AB8	E	63	79	Right-handed alpha
Helix 18	AB9	E	85	114	Right-handed alpha
Helix 19	AC1	E	120	132	Right-handed alpha
Helix 20	AC2	F	25	29	Right-handed 310
Helix 21	AC3	F	30	41	Right-handed alpha
Helix 22	AC4	F	49	76	Right-handed alpha
Helix 23	AC5	F	82	94	Right-handed alpha
Helix 24	AC6	G	35	47	Right-handed alpha
Helix 25	AC7	G	55	83	Right-handed alpha
Helix 26	AC8	G	88	99	Right-handed alpha
Helix 27	AC9	G	99	106	Right-handed alpha
Helix 28	AD1	H	62	74	Right-handed alpha
Helix 29	AD2	H	80	109	Right-handed alpha
Helix 30	AD3	H	115	127	Right-handed alpha
Helix 31	AD4	H	128	149	Right-handed alpha
Helix 32	AD5	K	185	193	Right-handed alpha
Helix 33	AD6	K	203	219	Right-handed alpha
Helix 34	AD7	K	233	247	Right-handed alpha
Helix 35	AD8	K	258	260	Right-handed 310
Helix 36	AD9	K	261	273	Right-handed alpha
Helix 37	AE1	K	284	295	Right-handed alpha
Helix 38	AE2	K	311	317	Right-handed alpha
Helix 39	AE3	K	317	323	Right-handed alpha
Helix 40	AE4	K	334	338	Right-handed 310
Helix 41	AE5	K	343	350	Right-handed alpha
Helix 42	AE6	K	369	380	Right-handed alpha
Helix 43	AE7	K	389	394	Right-handed 310
Helix 44	AE8	K	408	420	Right-handed alpha
Helix 45	AE9	K	420	428	Right-handed alpha
Helix 46	AF1	K	453	465	Right-handed alpha
Helix 47	AF2	K	467	476	Right-handed alpha
Helix 48	AF3	K	488	499	Right-handed alpha
Helix 49	AF4	K	500	508	Right-handed alpha
Helix 50	AF5	K	515	523	Right-handed alpha
Helix 51	AF6	K	523	540	Right-handed alpha
Helix 52	AF7	K	549	563	Right-handed alpha
Helix 53	AF8	K	575	588	Right-handed alpha
Helix 54	AF9	K	601	606	Right-handed 310
Helix 55	AG1	K	623	636	Right-handed alpha
Helix 56	AG2	K	653	674	Right-handed alpha
Helix 57	AG3	K	714	722	Right-handed alpha

There are 11 sheets in PDB entry 8J90. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	109	111	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	D	113	114	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	F	97	98	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	87	first strand
Strand 2	H	78	79	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	223	225	first strand
Strand 2	K	358	360	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	278	281	first strand
Strand 2	K	306	310	parallel
Strand 3	K	253	257	parallel
Strand 4	K	329	332	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	644	647	first strand
Strand 2	K	444	448	parallel
Strand 3	K	748	750	anti-parallel
Strand 4	K	744	745	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	569	570	first strand
Strand 2	K	597	599	parallel
Strand 3	K	543	547	parallel
Strand 4	K	614	617	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J90

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J90