Analysis of interatomic Contacts of Structural Units in PDB entry:
8J99

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J99 entry

There are 12 chains in PDB entry 8J99 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 501	SER 638
B	TYR 23	MET 563
C	LYS 501	SER 638
D	TYR 23	MET 563
E	LYS 501	SER 638
F	LYS 501	SER 638
G	TYR 23	MET 563
H	TYR 23	MET 563
I	LYS 501	SER 638
J	TYR 23	MET 563
K	LYS 501	SER 638
L	TYR 23	MET 563

There are156 helices in PDB entry 8J99. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	504	530	Right-handed alpha
Helix 2	AA2	A	535	539	Right-handed 310
Helix 3	AA3	B	39	66	Right-handed alpha
Helix 4	AA4	B	68	78	Right-handed alpha
Helix 5	AA5	B	82	91	Right-handed alpha
Helix 6	AA6	B	114	117	Right-handed 310
Helix 7	AA7	B	139	144	Right-handed 310
Helix 8	AA8	B	146	164	Right-handed alpha
Helix 9	AA9	B	177	179	Right-handed 310
Helix 10	AB1	B	180	185	Right-handed alpha
Helix 11	AB2	B	190	204	Right-handed alpha
Helix 12	AB3	B	221	227	Right-handed alpha
Helix 13	AB4	B	264	269	Right-handed alpha
Helix 14	AB5	B	279	293	Right-handed alpha
Helix 15	AB6	B	315	322	Right-handed alpha
Helix 16	AB7	B	330	339	Right-handed alpha
Helix 17	AB8	B	340	343	Right-handed 310
Helix 18	AB9	B	377	395	Right-handed alpha
Helix 19	AC1	B	414	432	Right-handed alpha
Helix 20	AC2	B	446	452	Right-handed alpha
Helix 21	AC3	B	454	458	Right-handed 310
Helix 22	AC4	B	474	493	Right-handed alpha
Helix 23	AC5	B	498	517	Right-handed alpha
Helix 24	AC6	B	518	525	Right-handed alpha
Helix 25	AC7	B	533	535	Right-handed 310
Helix 26	AC8	B	536	549	Right-handed alpha
Helix 27	AC9	C	504	530	Right-handed alpha
Helix 28	AD1	C	535	539	Right-handed 310
Helix 29	AD2	D	39	66	Right-handed alpha
Helix 30	AD3	D	68	78	Right-handed alpha
Helix 31	AD4	D	82	91	Right-handed alpha
Helix 32	AD5	D	114	117	Right-handed 310
Helix 33	AD6	D	139	144	Right-handed 310
Helix 34	AD7	D	146	164	Right-handed alpha
Helix 35	AD8	D	177	179	Right-handed 310
Helix 36	AD9	D	180	185	Right-handed alpha
Helix 37	AE1	D	190	204	Right-handed alpha
Helix 38	AE2	D	221	227	Right-handed alpha
Helix 39	AE3	D	264	269	Right-handed alpha
Helix 40	AE4	D	279	293	Right-handed alpha
Helix 41	AE5	D	315	322	Right-handed alpha
Helix 42	AE6	D	330	339	Right-handed alpha
Helix 43	AE7	D	340	343	Right-handed 310
Helix 44	AE8	D	377	395	Right-handed alpha
Helix 45	AE9	D	414	432	Right-handed alpha
Helix 46	AF1	D	446	452	Right-handed alpha
Helix 47	AF2	D	454	458	Right-handed 310
Helix 48	AF3	D	474	493	Right-handed alpha
Helix 49	AF4	D	498	517	Right-handed alpha
Helix 50	AF5	D	518	525	Right-handed alpha
Helix 51	AF6	D	533	535	Right-handed 310
Helix 52	AF7	D	536	549	Right-handed alpha
Helix 53	AF8	E	504	530	Right-handed alpha
Helix 54	AF9	E	535	539	Right-handed 310
Helix 55	AG1	F	504	530	Right-handed alpha
Helix 56	AG2	F	535	539	Right-handed 310
Helix 57	AG3	G	39	66	Right-handed alpha
Helix 58	AG4	G	68	78	Right-handed alpha
Helix 59	AG5	G	82	91	Right-handed alpha
Helix 60	AG6	G	114	117	Right-handed 310
Helix 61	AG7	G	139	144	Right-handed 310
Helix 62	AG8	G	146	164	Right-handed alpha
Helix 63	AG9	G	177	179	Right-handed 310
Helix 64	AH1	G	180	185	Right-handed alpha
Helix 65	AH2	G	190	204	Right-handed alpha
Helix 66	AH3	G	221	227	Right-handed alpha
Helix 67	AH4	G	264	269	Right-handed alpha
Helix 68	AH5	G	279	293	Right-handed alpha
Helix 69	AH6	G	315	322	Right-handed alpha
Helix 70	AH7	G	330	339	Right-handed alpha
Helix 71	AH8	G	340	343	Right-handed 310
Helix 72	AH9	G	377	395	Right-handed alpha
Helix 73	AI1	G	414	432	Right-handed alpha
Helix 74	AI2	G	446	452	Right-handed alpha
Helix 75	AI3	G	454	458	Right-handed 310
Helix 76	AI4	G	474	493	Right-handed alpha
Helix 77	AI5	G	498	517	Right-handed alpha
Helix 78	AI6	G	518	525	Right-handed alpha
Helix 79	AI7	G	533	535	Right-handed 310
Helix 80	AI8	G	536	549	Right-handed alpha
Helix 81	AI9	H	39	66	Right-handed alpha
Helix 82	AJ1	H	68	78	Right-handed alpha
Helix 83	AJ2	H	82	91	Right-handed alpha
Helix 84	AJ3	H	114	117	Right-handed 310
Helix 85	AJ4	H	139	144	Right-handed 310
Helix 86	AJ5	H	146	164	Right-handed alpha
Helix 87	AJ6	H	177	179	Right-handed 310
Helix 88	AJ7	H	180	185	Right-handed alpha
Helix 89	AJ8	H	190	204	Right-handed alpha
Helix 90	AJ9	H	221	227	Right-handed alpha
Helix 91	AK1	H	264	269	Right-handed alpha
Helix 92	AK2	H	279	293	Right-handed alpha
Helix 93	AK3	H	315	322	Right-handed alpha
Helix 94	AK4	H	330	339	Right-handed alpha
Helix 95	AK5	H	340	343	Right-handed 310
Helix 96	AK6	H	377	395	Right-handed alpha
Helix 97	AK7	H	414	432	Right-handed alpha
Helix 98	AK8	H	446	452	Right-handed alpha
Helix 99	AK9	H	454	458	Right-handed 310
Helix 100	AL1	H	474	493	Right-handed alpha
Helix 101	AL2	H	498	517	Right-handed alpha
Helix 102	AL3	H	518	525	Right-handed alpha
Helix 103	AL4	H	533	535	Right-handed 310
Helix 104	AL5	H	536	549	Right-handed alpha
Helix 105	AL6	I	504	530	Right-handed alpha
Helix 106	AL7	I	535	539	Right-handed 310
Helix 107	AL8	J	39	66	Right-handed alpha
Helix 108	AL9	J	68	78	Right-handed alpha
Helix 109	AM1	J	82	91	Right-handed alpha
Helix 110	AM2	J	114	117	Right-handed 310
Helix 111	AM3	J	139	144	Right-handed 310
Helix 112	AM4	J	146	164	Right-handed alpha
Helix 113	AM5	J	177	179	Right-handed 310
Helix 114	AM6	J	180	185	Right-handed alpha
Helix 115	AM7	J	190	204	Right-handed alpha
Helix 116	AM8	J	221	227	Right-handed alpha
Helix 117	AM9	J	264	269	Right-handed alpha
Helix 118	AN1	J	279	293	Right-handed alpha
Helix 119	AN2	J	315	322	Right-handed alpha
Helix 120	AN3	J	330	339	Right-handed alpha
Helix 121	AN4	J	340	343	Right-handed 310
Helix 122	AN5	J	377	395	Right-handed alpha
Helix 123	AN6	J	414	432	Right-handed alpha
Helix 124	AN7	J	446	452	Right-handed alpha
Helix 125	AN8	J	454	458	Right-handed 310
Helix 126	AN9	J	474	493	Right-handed alpha
Helix 127	AO1	J	498	517	Right-handed alpha
Helix 128	AO2	J	518	525	Right-handed alpha
Helix 129	AO3	J	533	535	Right-handed 310
Helix 130	AO4	J	536	549	Right-handed alpha
Helix 131	AO5	K	504	530	Right-handed alpha
Helix 132	AO6	K	535	539	Right-handed 310
Helix 133	AO7	L	39	66	Right-handed alpha
Helix 134	AO8	L	68	78	Right-handed alpha
Helix 135	AO9	L	82	91	Right-handed alpha
Helix 136	AP1	L	114	117	Right-handed 310
Helix 137	AP2	L	139	144	Right-handed 310
Helix 138	AP3	L	146	164	Right-handed alpha
Helix 139	AP4	L	177	179	Right-handed 310
Helix 140	AP5	L	180	185	Right-handed alpha
Helix 141	AP6	L	190	204	Right-handed alpha
Helix 142	AP7	L	221	227	Right-handed alpha
Helix 143	AP8	L	264	269	Right-handed alpha
Helix 144	AP9	L	279	293	Right-handed alpha
Helix 145	AQ1	L	315	322	Right-handed alpha
Helix 146	AQ2	L	330	339	Right-handed alpha
Helix 147	AQ3	L	340	343	Right-handed 310
Helix 148	AQ4	L	377	395	Right-handed alpha
Helix 149	AQ5	L	414	432	Right-handed alpha
Helix 150	AQ6	L	446	452	Right-handed alpha
Helix 151	AQ7	L	454	458	Right-handed 310
Helix 152	AQ8	L	474	493	Right-handed alpha
Helix 153	AQ9	L	498	517	Right-handed alpha
Helix 154	AR1	L	518	525	Right-handed alpha
Helix 155	AR2	L	533	535	Right-handed 310
Helix 156	AR3	L	536	549	Right-handed alpha

There are 24 sheets in PDB entry 8J99. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	557	first strand
Strand 2	A	560	568	anti-parallel
Strand 3	A	574	578	anti-parallel
Strand 4	A	581	592	anti-parallel
Strand 5	A	595	602	anti-parallel
Strand 6	A	605	614	anti-parallel
Strand 7	A	617	621	anti-parallel
Strand 8	A	626	630	anti-parallel
Strand 9	A	550	557	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	119	126	anti-parallel
Strand 3	B	129	136	anti-parallel
Strand 4	B	167	171	parallel
Strand 5	B	208	212	parallel
Strand 6	B	229	233	parallel
Strand 7	B	276	277	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	346	first strand
Strand 2	B	355	362	anti-parallel
Strand 3	B	365	372	anti-parallel
Strand 4	B	398	402	parallel
Strand 5	B	436	440	parallel
Strand 6	B	461	464	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	445	first strand
Strand 2	B	469	471	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	550	557	first strand
Strand 2	C	560	568	anti-parallel
Strand 3	C	574	578	anti-parallel
Strand 4	C	581	592	anti-parallel
Strand 5	C	595	602	anti-parallel
Strand 6	C	605	613	anti-parallel
Strand 7	C	617	621	anti-parallel
Strand 8	C	626	630	anti-parallel
Strand 9	C	550	557	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	119	126	anti-parallel
Strand 3	D	129	136	anti-parallel
Strand 4	D	167	171	parallel
Strand 5	D	208	212	parallel
Strand 6	D	229	233	parallel
Strand 7	D	276	277	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	346	first strand
Strand 2	D	355	362	anti-parallel
Strand 3	D	365	372	anti-parallel
Strand 4	D	398	402	parallel
Strand 5	D	436	440	parallel
Strand 6	D	461	464	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	443	445	first strand
Strand 2	D	469	471	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	549	557	first strand
Strand 2	E	560	568	anti-parallel
Strand 3	E	574	578	anti-parallel
Strand 4	E	581	592	anti-parallel
Strand 5	E	595	602	anti-parallel
Strand 6	E	605	614	anti-parallel
Strand 7	E	617	621	anti-parallel
Strand 8	E	626	630	anti-parallel
Strand 9	E	549	557	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	550	557	first strand
Strand 2	F	560	568	anti-parallel
Strand 3	F	574	578	anti-parallel
Strand 4	F	581	592	anti-parallel
Strand 5	F	595	602	anti-parallel
Strand 6	F	605	613	anti-parallel
Strand 7	F	617	621	anti-parallel
Strand 8	F	626	630	anti-parallel
Strand 9	F	550	557	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	98	100	first strand
Strand 2	G	119	126	anti-parallel
Strand 3	G	129	136	anti-parallel
Strand 4	G	167	171	parallel
Strand 5	G	208	212	parallel
Strand 6	G	229	233	parallel
Strand 7	G	276	277	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	345	346	first strand
Strand 2	G	355	362	anti-parallel
Strand 3	G	365	372	anti-parallel
Strand 4	G	398	402	parallel
Strand 5	G	436	440	parallel
Strand 6	G	461	464	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	443	445	first strand
Strand 2	G	469	471	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	98	100	first strand
Strand 2	H	119	126	anti-parallel
Strand 3	H	129	136	anti-parallel
Strand 4	H	167	171	parallel
Strand 5	H	208	212	parallel
Strand 6	H	229	233	parallel
Strand 7	H	276	277	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	345	346	first strand
Strand 2	H	355	362	anti-parallel
Strand 3	H	365	372	anti-parallel
Strand 4	H	398	402	parallel
Strand 5	H	436	440	parallel
Strand 6	H	461	464	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	443	445	first strand
Strand 2	H	469	471	parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	550	557	first strand
Strand 2	I	560	568	anti-parallel
Strand 3	I	574	578	anti-parallel
Strand 4	I	581	592	anti-parallel
Strand 5	I	595	602	anti-parallel
Strand 6	I	605	614	anti-parallel
Strand 7	I	617	621	anti-parallel
Strand 8	I	626	630	anti-parallel
Strand 9	I	550	557	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	98	100	first strand
Strand 2	J	119	126	anti-parallel
Strand 3	J	129	136	anti-parallel
Strand 4	J	167	171	parallel
Strand 5	J	208	212	parallel
Strand 6	J	229	233	parallel
Strand 7	J	276	277	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	345	346	first strand
Strand 2	J	355	362	anti-parallel
Strand 3	J	365	372	anti-parallel
Strand 4	J	398	402	parallel
Strand 5	J	436	440	parallel
Strand 6	J	461	464	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	443	445	first strand
Strand 2	J	469	471	parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	549	557	first strand
Strand 2	K	560	568	anti-parallel
Strand 3	K	574	578	anti-parallel
Strand 4	K	581	592	anti-parallel
Strand 5	K	595	602	anti-parallel
Strand 6	K	605	614	anti-parallel
Strand 7	K	617	621	anti-parallel
Strand 8	K	626	630	anti-parallel
Strand 9	K	549	557	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	98	100	first strand
Strand 2	L	119	126	anti-parallel
Strand 3	L	129	136	anti-parallel
Strand 4	L	167	171	parallel
Strand 5	L	208	212	parallel
Strand 6	L	229	233	parallel
Strand 7	L	276	277	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	345	346	first strand
Strand 2	L	355	362	anti-parallel
Strand 3	L	365	372	anti-parallel
Strand 4	L	398	402	parallel
Strand 5	L	436	440	parallel
Strand 6	L	461	464	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	443	445	first strand
Strand 2	L	469	471	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J99

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J99