Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J9B entry

There are 10 chains in PDB entry 8J9B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	PHE 375
B	GLU 2	PHE 375
C	ALA 6	PHE 375
D	ILE 5	PHE 375
E	ILE 5	PHE 375
F	GLU 3	PHE 375
H	SER 20	GLU 370
I	GLU 25	GLU 370
J	GLN 22	GLU 370
K	TYR 21	GLU 370

There are183 helices in PDB entry 8J9B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	91	Right-handed alpha
Helix 2	AA2	A	113	126	Right-handed alpha
Helix 3	AA3	A	137	146	Right-handed alpha
Helix 4	AA4	A	181	195	Right-handed alpha
Helix 5	AA5	A	202	216	Right-handed alpha
Helix 6	AA6	A	222	227	Right-handed alpha
Helix 7	AA7	A	258	263	Right-handed alpha
Helix 8	AA8	A	273	283	Right-handed alpha
Helix 9	AA9	A	286	296	Right-handed alpha
Helix 10	AB1	A	301	305	Right-handed 310
Helix 11	AB2	A	308	321	Right-handed alpha
Helix 12	AB3	A	337	348	Right-handed alpha
Helix 13	AB4	A	349	355	Right-handed 310
Helix 14	AB5	A	358	363	Right-handed alpha
Helix 15	AB6	A	368	373	Right-handed alpha
Helix 16	AB7	B	55	61	Right-handed alpha
Helix 17	AB8	B	62	65	Right-handed 310
Helix 18	AB9	B	78	93	Right-handed alpha
Helix 19	AC1	B	112	126	Right-handed alpha
Helix 20	AC2	B	137	146	Right-handed alpha
Helix 21	AC3	B	181	194	Right-handed alpha
Helix 22	AC4	B	195	197	Right-handed 310
Helix 23	AC5	B	222	227	Right-handed alpha
Helix 24	AC6	B	252	257	Right-handed alpha
Helix 25	AC7	B	258	263	Right-handed alpha
Helix 26	AC8	B	264	268	Right-handed 310
Helix 27	AC9	B	273	284	Right-handed alpha
Helix 28	AD1	B	289	296	Right-handed alpha
Helix 29	AD2	B	301	305	Right-handed 310
Helix 30	AD3	B	308	320	Right-handed alpha
Helix 31	AD4	B	334	336	Right-handed 310
Helix 32	AD5	B	337	348	Right-handed alpha
Helix 33	AD6	B	349	353	Right-handed 310
Helix 34	AD7	B	359	366	Right-handed alpha
Helix 35	AD8	B	368	374	Right-handed alpha
Helix 36	AD9	C	81	92	Right-handed alpha
Helix 37	AE1	C	112	126	Right-handed alpha
Helix 38	AE2	C	138	144	Right-handed alpha
Helix 39	AE3	C	181	195	Right-handed alpha
Helix 40	AE4	C	209	216	Right-handed alpha
Helix 41	AE5	C	222	229	Right-handed alpha
Helix 42	AE6	C	256	260	Right-handed 310
Helix 43	AE7	C	272	283	Right-handed alpha
Helix 44	AE8	C	289	295	Right-handed alpha
Helix 45	AE9	C	301	305	Right-handed 310
Helix 46	AF1	C	310	321	Right-handed alpha
Helix 47	AF2	C	334	336	Right-handed 310
Helix 48	AF3	C	337	348	Right-handed alpha
Helix 49	AF4	C	349	354	Right-handed 310
Helix 50	AF5	C	359	366	Right-handed alpha
Helix 51	AF6	C	369	374	Right-handed alpha
Helix 52	AF7	D	56	58	Right-handed 310
Helix 53	AF8	D	84	91	Right-handed alpha
Helix 54	AF9	D	112	115	Right-handed 310
Helix 55	AG1	D	116	126	Right-handed alpha
Helix 56	AG2	D	137	145	Right-handed alpha
Helix 57	AG3	D	171	175	Right-handed 310
Helix 58	AG4	D	181	196	Right-handed alpha
Helix 59	AG5	D	208	217	Right-handed alpha
Helix 60	AG6	D	222	229	Right-handed alpha
Helix 61	AG7	D	257	261	Right-handed 310
Helix 62	AG8	D	275	277	Right-handed 310
Helix 63	AG9	D	278	283	Right-handed alpha
Helix 64	AH1	D	289	296	Right-handed alpha
Helix 65	AH2	D	308	316	Right-handed alpha
Helix 66	AH3	D	316	321	Right-handed alpha
Helix 67	AH4	D	334	336	Right-handed 310
Helix 68	AH5	D	337	349	Right-handed alpha
Helix 69	AH6	D	359	366	Right-handed alpha
Helix 70	AH7	D	368	374	Right-handed alpha
Helix 71	AH8	E	56	59	Right-handed 310
Helix 72	AH9	E	78	80	Right-handed 310
Helix 73	AI1	E	81	92	Right-handed alpha
Helix 74	AI2	E	113	125	Right-handed alpha
Helix 75	AI3	E	137	145	Right-handed alpha
Helix 76	AI4	E	181	187	Right-handed alpha
Helix 77	AI5	E	222	229	Right-handed alpha
Helix 78	AI6	E	258	263	Right-handed alpha
Helix 79	AI7	E	264	267	Right-handed 310
Helix 80	AI8	E	276	284	Right-handed alpha
Helix 81	AI9	E	286	295	Right-handed alpha
Helix 82	AJ1	E	308	321	Right-handed alpha
Helix 83	AJ2	E	334	336	Right-handed 310
Helix 84	AJ3	E	337	348	Right-handed alpha
Helix 85	AJ4	E	351	355	Right-handed 310
Helix 86	AJ5	E	359	365	Right-handed alpha
Helix 87	AJ6	E	369	373	Right-handed 310
Helix 88	AJ7	F	55	61	Right-handed alpha
Helix 89	AJ8	F	78	93	Right-handed alpha
Helix 90	AJ9	F	97	101	Right-handed 310
Helix 91	AK1	F	112	126	Right-handed alpha
Helix 92	AK2	F	137	146	Right-handed alpha
Helix 93	AK3	F	172	175	Right-handed 310
Helix 94	AK4	F	181	186	Right-handed alpha
Helix 95	AK5	F	187	193	Right-handed alpha
Helix 96	AK6	F	208	216	Right-handed alpha
Helix 97	AK7	F	222	233	Right-handed alpha
Helix 98	AK8	F	253	257	Right-handed alpha
Helix 99	AK9	F	258	263	Right-handed alpha
Helix 100	AL1	F	264	268	Right-handed 310
Helix 101	AL2	F	273	283	Right-handed alpha
Helix 102	AL3	F	286	295	Right-handed alpha
Helix 103	AL4	F	301	305	Right-handed 310
Helix 104	AL5	F	308	321	Right-handed alpha
Helix 105	AL6	F	334	336	Right-handed 310
Helix 106	AL7	F	337	347	Right-handed alpha
Helix 107	AL8	F	348	353	Right-handed 310
Helix 108	AL9	F	359	366	Right-handed alpha
Helix 109	AM1	F	368	374	Right-handed alpha
Helix 110	AM2	H	21	30	Right-handed alpha
Helix 111	AM3	H	38	54	Right-handed alpha
Helix 112	AM4	H	62	73	Right-handed alpha
Helix 113	AM5	H	75	90	Right-handed alpha
Helix 114	AM6	H	95	106	Right-handed alpha
Helix 115	AM7	H	112	116	Right-handed 310
Helix 116	AM8	H	117	137	Right-handed alpha
Helix 117	AM9	H	140	151	Right-handed alpha
Helix 118	AN1	H	154	158	Right-handed 310
Helix 119	AN2	H	167	176	Right-handed alpha
Helix 120	AN3	H	177	181	Right-handed 310
Helix 121	AN4	H	182	191	Right-handed alpha
Helix 122	AN5	H	195	199	Right-handed 310
Helix 123	AN6	H	224	228	Right-handed 310
Helix 124	AN7	H	246	251	Right-handed alpha
Helix 125	AN8	H	263	276	Right-handed alpha
Helix 126	AN9	H	283	302	Right-handed alpha
Helix 127	AO1	H	306	315	Right-handed alpha
Helix 128	AO2	H	316	326	Right-handed alpha
Helix 129	AO3	H	338	356	Right-handed alpha
Helix 130	AO4	H	361	366	Right-handed alpha
Helix 131	AO5	H	367	369	Right-handed 310
Helix 132	AO6	I	38	54	Right-handed alpha
Helix 133	AO7	I	60	73	Right-handed alpha
Helix 134	AO8	I	75	90	Right-handed alpha
Helix 135	AO9	I	95	103	Right-handed alpha
Helix 136	AP1	I	117	133	Right-handed alpha
Helix 137	AP2	I	143	148	Right-handed alpha
Helix 138	AP3	I	166	181	Right-handed alpha
Helix 139	AP4	I	185	192	Right-handed alpha
Helix 140	AP5	I	195	199	Right-handed 310
Helix 141	AP6	I	224	228	Right-handed 310
Helix 142	AP7	I	246	251	Right-handed alpha
Helix 143	AP8	I	261	263	Right-handed 310
Helix 144	AP9	I	264	279	Right-handed alpha
Helix 145	AQ1	I	283	302	Right-handed alpha
Helix 146	AQ2	I	306	315	Right-handed alpha
Helix 147	AQ3	I	316	325	Right-handed alpha
Helix 148	AQ4	I	338	366	Right-handed alpha
Helix 149	AQ5	J	23	32	Right-handed alpha
Helix 150	AQ6	J	38	54	Right-handed alpha
Helix 151	AQ7	J	60	74	Right-handed alpha
Helix 152	AQ8	J	75	90	Right-handed alpha
Helix 153	AQ9	J	95	106	Right-handed alpha
Helix 154	AR1	J	107	109	Right-handed 310
Helix 155	AR2	J	117	137	Right-handed alpha
Helix 156	AR3	J	141	151	Right-handed alpha
Helix 157	AR4	J	167	177	Right-handed alpha
Helix 158	AR5	J	178	181	Right-handed 310
Helix 159	AR6	J	182	193	Right-handed alpha
Helix 160	AR7	J	246	251	Right-handed alpha
Helix 161	AR8	J	262	278	Right-handed alpha
Helix 162	AR9	J	283	302	Right-handed alpha
Helix 163	AS1	J	306	315	Right-handed alpha
Helix 164	AS2	J	316	326	Right-handed alpha
Helix 165	AS3	J	338	367	Right-handed alpha
Helix 166	AS4	K	22	32	Right-handed alpha
Helix 167	AS5	K	38	54	Right-handed alpha
Helix 168	AS6	K	57	59	Right-handed 310
Helix 169	AS7	K	60	73	Right-handed alpha
Helix 170	AS8	K	77	87	Right-handed alpha
Helix 171	AS9	K	98	106	Right-handed alpha
Helix 172	AT1	K	117	134	Right-handed alpha
Helix 173	AT2	K	141	151	Right-handed alpha
Helix 174	AT3	K	171	176	Right-handed alpha
Helix 175	AT4	K	177	181	Right-handed 310
Helix 176	AT5	K	182	191	Right-handed alpha
Helix 177	AT6	K	246	251	Right-handed alpha
Helix 178	AT7	K	263	279	Right-handed alpha
Helix 179	AT8	K	283	302	Right-handed alpha
Helix 180	AT9	K	306	315	Right-handed alpha
Helix 181	AU1	K	316	326	Right-handed alpha
Helix 182	AU2	K	338	358	Right-handed alpha
Helix 183	AU3	K	358	366	Right-handed alpha

There are 34 sheets in PDB entry 8J9B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	11	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	135	136	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	53	54	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	176	178	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	154	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	240	first strand
Strand 2	B	248	249	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	154	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	241	first strand
Strand 2	C	247	251	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	12	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	37	anti-parallel
Strand 3	D	66	68	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	178	first strand
Strand 2	D	160	165	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	301	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	242	first strand
Strand 2	D	246	250	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	16	21	anti-parallel
Strand 3	E	8	11	anti-parallel
Strand 4	E	103	107	parallel
Strand 5	E	131	136	parallel
Strand 6	E	357	358	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	53	54	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	75	76	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	176	178	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	149	154	anti-parallel
Strand 4	E	297	300	parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	32	first strand
Strand 2	F	16	21	anti-parallel
Strand 3	F	8	12	anti-parallel
Strand 4	F	103	107	parallel
Strand 5	F	131	136	parallel
Strand 6	F	357	358	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	35	38	anti-parallel
Strand 3	F	65	68	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	72	first strand
Strand 2	F	75	76	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	170	first strand
Strand 2	F	160	166	anti-parallel
Strand 3	F	176	178	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	170	first strand
Strand 2	F	160	166	anti-parallel
Strand 3	F	150	155	anti-parallel
Strand 4	F	297	300	parallel
Strand 5	F	329	330	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	207	211	first strand
Strand 2	H	232	236	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	207	209	first strand
Strand 2	I	234	236	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	208	211	first strand
Strand 2	J	232	235	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	208	211	first strand
Strand 2	K	232	235	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J9B

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9B