Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J9C entry

There are 3 chains in PDB entry 8J9C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 22	ARG 626
B	ALA 22	ARG 626
C	ALA 22	LEU 86

There are 97 helices in PDB entry 8J9C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	81	Right-handed 310
Helix 2	AA2	A	129	133	Right-handed 310
Helix 3	AA3	A	145	150	Right-handed 310
Helix 4	AA4	A	157	160	Right-handed 310
Helix 5	AA5	A	196	201	Right-handed alpha
Helix 6	AA6	A	230	235	Right-handed 310
Helix 7	AA7	A	237	256	Right-handed alpha
Helix 8	AA8	A	299	303	Right-handed 310
Helix 9	AA9	A	304	315	Right-handed alpha
Helix 10	AB1	A	337	342	Right-handed alpha
Helix 11	AB2	A	342	357	Right-handed alpha
Helix 12	AB3	A	360	377	Right-handed alpha
Helix 13	AB4	A	379	384	Right-handed 310
Helix 14	AB5	A	387	391	Right-handed 310
Helix 15	AB6	A	392	398	Right-handed alpha
Helix 16	AB7	A	404	409	Right-handed alpha
Helix 17	AB8	A	414	432	Right-handed alpha
Helix 18	AB9	A	437	447	Right-handed alpha
Helix 19	AC1	A	459	471	Right-handed alpha
Helix 20	AC2	A	474	484	Right-handed alpha
Helix 21	AC3	A	490	496	Right-handed alpha
Helix 22	AC4	A	507	514	Right-handed alpha
Helix 23	AC5	A	543	548	Right-handed alpha
Helix 24	AC6	A	565	576	Right-handed alpha
Helix 25	AC7	A	617	623	Right-handed alpha
Helix 26	AC8	B	79	81	Right-handed 310
Helix 27	AC9	B	129	133	Right-handed 310
Helix 28	AD1	B	145	150	Right-handed 310
Helix 29	AD2	B	157	160	Right-handed 310
Helix 30	AD3	B	196	201	Right-handed alpha
Helix 31	AD4	B	230	235	Right-handed 310
Helix 32	AD5	B	237	256	Right-handed alpha
Helix 33	AD6	B	299	303	Right-handed 310
Helix 34	AD7	B	304	315	Right-handed alpha
Helix 35	AD8	B	337	342	Right-handed alpha
Helix 36	AD9	B	342	357	Right-handed alpha
Helix 37	AE1	B	360	377	Right-handed alpha
Helix 38	AE2	B	379	384	Right-handed 310
Helix 39	AE3	B	387	391	Right-handed 310
Helix 40	AE4	B	392	398	Right-handed alpha
Helix 41	AE5	B	414	433	Right-handed alpha
Helix 42	AE6	B	437	447	Right-handed alpha
Helix 43	AE7	B	459	471	Right-handed alpha
Helix 44	AE8	B	474	484	Right-handed alpha
Helix 45	AE9	B	490	496	Right-handed alpha
Helix 46	AF1	B	507	515	Right-handed alpha
Helix 47	AF2	B	543	548	Right-handed alpha
Helix 48	AF3	B	565	576	Right-handed alpha
Helix 49	AF4	B	617	623	Right-handed alpha
Helix 50	AF5	C	79	81	Right-handed 310
Helix 51	AF6	C	129	133	Right-handed 310
Helix 52	AF7	C	145	150	Right-handed 310
Helix 53	AF8	C	157	160	Right-handed 310
Helix 54	AF9	C	196	201	Right-handed alpha
Helix 55	AG1	C	230	235	Right-handed 310
Helix 56	AG2	C	237	256	Right-handed alpha
Helix 57	AG3	C	299	303	Right-handed 310
Helix 58	AG4	C	304	313	Right-handed alpha
Helix 59	AG5	C	337	342	Right-handed alpha
Helix 60	AG6	C	342	357	Right-handed alpha
Helix 61	AG7	C	360	377	Right-handed alpha
Helix 62	AG8	C	379	384	Right-handed 310
Helix 63	AG9	C	387	391	Right-handed 310
Helix 64	AH1	C	392	398	Right-handed alpha
Helix 65	AH2	C	404	409	Right-handed alpha
Helix 66	AH3	C	414	433	Right-handed alpha
Helix 67	AH4	C	437	447	Right-handed alpha
Helix 68	AH5	C	459	471	Right-handed alpha
Helix 69	AH6	C	474	484	Right-handed alpha
Helix 70	AH7	C	490	496	Right-handed alpha
Helix 71	AH8	C	507	514	Right-handed alpha
Helix 72	AH9	C	543	548	Right-handed alpha
Helix 73	AI1	C	565	576	Right-handed alpha
Helix 74	AI2	C	617	624	Right-handed alpha
Helix 75	AI3	D	79	81	Right-handed 310
Helix 76	AI4	D	129	133	Right-handed 310
Helix 77	AI5	D	145	150	Right-handed 310
Helix 78	AI6	D	157	160	Right-handed 310
Helix 79	AI7	D	196	201	Right-handed alpha
Helix 80	AI8	D	230	235	Right-handed 310
Helix 81	AI9	D	237	256	Right-handed alpha
Helix 82	AJ1	D	304	312	Right-handed alpha
Helix 83	AJ2	D	337	342	Right-handed alpha
Helix 84	AJ3	D	342	357	Right-handed alpha
Helix 85	AJ4	D	360	377	Right-handed alpha
Helix 86	AJ5	D	379	384	Right-handed 310
Helix 87	AJ6	D	387	391	Right-handed 310
Helix 88	AJ7	D	392	398	Right-handed alpha
Helix 89	AJ8	D	414	433	Right-handed alpha
Helix 90	AJ9	D	437	447	Right-handed alpha
Helix 91	AK1	D	459	471	Right-handed alpha
Helix 92	AK2	D	474	484	Right-handed alpha
Helix 93	AK3	D	490	496	Right-handed alpha
Helix 94	AK4	D	507	514	Right-handed alpha
Helix 95	AK5	D	543	548	Right-handed alpha
Helix 96	AK6	D	565	576	Right-handed alpha
Helix 97	AK7	D	617	623	Right-handed alpha

There are 36 sheets in PDB entry 8J9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	83	90	anti-parallel
Strand 3	A	117	125	anti-parallel
Strand 4	A	48	56	anti-parallel
Strand 5	A	34	43	anti-parallel
Strand 6	A	162	168	parallel
Strand 7	A	188	191	anti-parallel
Strand 8	A	181	185	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	83	90	anti-parallel
Strand 3	A	117	125	anti-parallel
Strand 4	A	48	56	anti-parallel
Strand 5	A	34	43	anti-parallel
Strand 6	A	162	168	parallel
Strand 7	A	194	195	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	103	111	anti-parallel
Strand 3	A	60	65	anti-parallel
Strand 4	A	152	153	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	144	first strand
Strand 2	A	204	207	anti-parallel
Strand 3	A	174	176	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	216	first strand
Strand 2	A	222	228	anti-parallel
Strand 3	A	263	269	parallel
Strand 4	A	283	288	parallel
Strand 5	A	277	279	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	A	456	458	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	503	first strand
Strand 2	A	606	611	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	521	first strand
Strand 2	A	528	530	anti-parallel
Strand 3	A	536	539	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	563	first strand
Strand 2	A	555	559	anti-parallel
Strand 3	A	583	589	anti-parallel
Strand 4	A	592	598	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	83	90	anti-parallel
Strand 3	B	117	125	anti-parallel
Strand 4	B	48	56	anti-parallel
Strand 5	B	34	43	anti-parallel
Strand 6	B	162	168	parallel
Strand 7	B	188	191	anti-parallel
Strand 8	B	181	185	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	83	90	anti-parallel
Strand 3	B	117	125	anti-parallel
Strand 4	B	48	56	anti-parallel
Strand 5	B	34	43	anti-parallel
Strand 6	B	162	168	parallel
Strand 7	B	194	195	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	103	111	anti-parallel
Strand 3	B	60	65	anti-parallel
Strand 4	B	152	153	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	144	first strand
Strand 2	B	204	207	anti-parallel
Strand 3	B	174	176	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	216	first strand
Strand 2	B	222	228	anti-parallel
Strand 3	B	263	269	parallel
Strand 4	B	283	288	parallel
Strand 5	B	277	279	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	321	first strand
Strand 2	B	456	458	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	503	first strand
Strand 2	B	606	611	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	521	first strand
Strand 2	B	528	530	anti-parallel
Strand 3	B	536	539	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	562	563	first strand
Strand 2	B	555	559	anti-parallel
Strand 3	B	583	589	anti-parallel
Strand 4	B	592	598	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	83	90	anti-parallel
Strand 3	C	117	125	anti-parallel
Strand 4	C	48	56	anti-parallel
Strand 5	C	35	43	anti-parallel
Strand 6	C	162	168	parallel
Strand 7	C	188	191	anti-parallel
Strand 8	C	181	185	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	83	90	anti-parallel
Strand 3	C	117	125	anti-parallel
Strand 4	C	48	56	anti-parallel
Strand 5	C	35	43	anti-parallel
Strand 6	C	162	168	parallel
Strand 7	C	194	195	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	103	111	anti-parallel
Strand 3	C	60	65	anti-parallel
Strand 4	C	152	153	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	144	first strand
Strand 2	C	204	207	anti-parallel
Strand 3	C	174	176	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	216	first strand
Strand 2	C	222	228	anti-parallel
Strand 3	C	263	269	parallel
Strand 4	C	283	288	parallel
Strand 5	C	277	279	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	321	first strand
Strand 2	C	456	458	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	503	first strand
Strand 2	C	606	611	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	520	521	first strand
Strand 2	C	528	530	anti-parallel
Strand 3	C	536	539	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	562	563	first strand
Strand 2	C	555	559	anti-parallel
Strand 3	C	583	589	anti-parallel
Strand 4	C	592	598	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	83	90	anti-parallel
Strand 3	D	117	125	anti-parallel
Strand 4	D	48	56	anti-parallel
Strand 5	D	34	43	anti-parallel
Strand 6	D	162	168	parallel
Strand 7	D	188	191	anti-parallel
Strand 8	D	181	185	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	83	90	anti-parallel
Strand 3	D	117	125	anti-parallel
Strand 4	D	48	56	anti-parallel
Strand 5	D	34	43	anti-parallel
Strand 6	D	162	168	parallel
Strand 7	D	194	195	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	103	111	anti-parallel
Strand 3	D	60	65	anti-parallel
Strand 4	D	152	153	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	144	first strand
Strand 2	D	204	207	anti-parallel
Strand 3	D	174	176	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	216	first strand
Strand 2	D	222	228	anti-parallel
Strand 3	D	263	269	parallel
Strand 4	D	283	288	parallel
Strand 5	D	277	279	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	319	321	first strand
Strand 2	D	456	458	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	498	503	first strand
Strand 2	D	606	611	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	520	521	first strand
Strand 2	D	528	530	anti-parallel
Strand 3	D	536	539	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	562	563	first strand
Strand 2	D	555	559	anti-parallel
Strand 3	D	583	589	anti-parallel
Strand 4	D	592	598	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J9C

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9C