Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J9D entry

There are 3 chains in PDB entry 8J9D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 22	ARG 626
B	ALA 22	ARG 626
C	ALA 22	PRO 79

There are 96 helices in PDB entry 8J9D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	81	Right-handed 310
Helix 2	AA2	A	129	133	Right-handed 310
Helix 3	AA3	A	145	150	Right-handed 310
Helix 4	AA4	A	157	160	Right-handed 310
Helix 5	AA5	A	196	201	Right-handed alpha
Helix 6	AA6	A	230	235	Right-handed 310
Helix 7	AA7	A	237	256	Right-handed alpha
Helix 8	AA8	A	304	315	Right-handed alpha
Helix 9	AA9	A	337	342	Right-handed alpha
Helix 10	AB1	A	342	356	Right-handed alpha
Helix 11	AB2	A	360	377	Right-handed alpha
Helix 12	AB3	A	379	384	Right-handed 310
Helix 13	AB4	A	387	391	Right-handed 310
Helix 14	AB5	A	392	398	Right-handed alpha
Helix 15	AB6	A	404	409	Right-handed alpha
Helix 16	AB7	A	414	432	Right-handed alpha
Helix 17	AB8	A	437	447	Right-handed alpha
Helix 18	AB9	A	459	471	Right-handed alpha
Helix 19	AC1	A	474	484	Right-handed alpha
Helix 20	AC2	A	490	496	Right-handed alpha
Helix 21	AC3	A	507	515	Right-handed alpha
Helix 22	AC4	A	543	548	Right-handed alpha
Helix 23	AC5	A	565	577	Right-handed alpha
Helix 24	AC6	A	617	623	Right-handed alpha
Helix 25	AC7	B	79	81	Right-handed 310
Helix 26	AC8	B	129	133	Right-handed 310
Helix 27	AC9	B	145	150	Right-handed 310
Helix 28	AD1	B	157	160	Right-handed 310
Helix 29	AD2	B	196	201	Right-handed alpha
Helix 30	AD3	B	230	235	Right-handed 310
Helix 31	AD4	B	237	256	Right-handed alpha
Helix 32	AD5	B	303	315	Right-handed alpha
Helix 33	AD6	B	337	342	Right-handed alpha
Helix 34	AD7	B	342	356	Right-handed alpha
Helix 35	AD8	B	360	377	Right-handed alpha
Helix 36	AD9	B	379	384	Right-handed 310
Helix 37	AE1	B	387	391	Right-handed 310
Helix 38	AE2	B	392	398	Right-handed alpha
Helix 39	AE3	B	404	409	Right-handed alpha
Helix 40	AE4	B	414	432	Right-handed alpha
Helix 41	AE5	B	437	447	Right-handed alpha
Helix 42	AE6	B	459	471	Right-handed alpha
Helix 43	AE7	B	474	484	Right-handed alpha
Helix 44	AE8	B	490	496	Right-handed alpha
Helix 45	AE9	B	507	515	Right-handed alpha
Helix 46	AF1	B	543	548	Right-handed alpha
Helix 47	AF2	B	565	576	Right-handed alpha
Helix 48	AF3	B	617	623	Right-handed alpha
Helix 49	AF4	C	79	81	Right-handed 310
Helix 50	AF5	C	129	133	Right-handed 310
Helix 51	AF6	C	145	150	Right-handed 310
Helix 52	AF7	C	157	160	Right-handed 310
Helix 53	AF8	C	196	201	Right-handed alpha
Helix 54	AF9	C	230	235	Right-handed 310
Helix 55	AG1	C	237	256	Right-handed alpha
Helix 56	AG2	C	304	315	Right-handed alpha
Helix 57	AG3	C	337	342	Right-handed alpha
Helix 58	AG4	C	342	356	Right-handed alpha
Helix 59	AG5	C	360	377	Right-handed alpha
Helix 60	AG6	C	379	384	Right-handed 310
Helix 61	AG7	C	387	391	Right-handed 310
Helix 62	AG8	C	392	398	Right-handed alpha
Helix 63	AG9	C	404	409	Right-handed alpha
Helix 64	AH1	C	414	432	Right-handed alpha
Helix 65	AH2	C	437	447	Right-handed alpha
Helix 66	AH3	C	459	471	Right-handed alpha
Helix 67	AH4	C	474	484	Right-handed alpha
Helix 68	AH5	C	490	496	Right-handed alpha
Helix 69	AH6	C	507	515	Right-handed alpha
Helix 70	AH7	C	543	548	Right-handed alpha
Helix 71	AH8	C	565	577	Right-handed alpha
Helix 72	AH9	C	617	623	Right-handed alpha
Helix 73	AI1	D	79	81	Right-handed 310
Helix 74	AI2	D	129	133	Right-handed 310
Helix 75	AI3	D	145	150	Right-handed 310
Helix 76	AI4	D	157	160	Right-handed 310
Helix 77	AI5	D	196	201	Right-handed alpha
Helix 78	AI6	D	230	235	Right-handed 310
Helix 79	AI7	D	237	256	Right-handed alpha
Helix 80	AI8	D	304	315	Right-handed alpha
Helix 81	AI9	D	337	342	Right-handed alpha
Helix 82	AJ1	D	342	356	Right-handed alpha
Helix 83	AJ2	D	360	377	Right-handed alpha
Helix 84	AJ3	D	379	384	Right-handed 310
Helix 85	AJ4	D	387	391	Right-handed 310
Helix 86	AJ5	D	392	398	Right-handed alpha
Helix 87	AJ6	D	404	409	Right-handed alpha
Helix 88	AJ7	D	414	432	Right-handed alpha
Helix 89	AJ8	D	437	447	Right-handed alpha
Helix 90	AJ9	D	459	471	Right-handed alpha
Helix 91	AK1	D	474	484	Right-handed alpha
Helix 92	AK2	D	490	496	Right-handed alpha
Helix 93	AK3	D	507	515	Right-handed alpha
Helix 94	AK4	D	543	548	Right-handed alpha
Helix 95	AK5	D	565	576	Right-handed alpha
Helix 96	AK6	D	617	623	Right-handed alpha

There are 36 sheets in PDB entry 8J9D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	83	90	anti-parallel
Strand 3	A	117	125	anti-parallel
Strand 4	A	48	56	anti-parallel
Strand 5	A	34	43	anti-parallel
Strand 6	A	162	168	parallel
Strand 7	A	188	191	anti-parallel
Strand 8	A	181	185	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	83	90	anti-parallel
Strand 3	A	117	125	anti-parallel
Strand 4	A	48	56	anti-parallel
Strand 5	A	34	43	anti-parallel
Strand 6	A	162	168	parallel
Strand 7	A	194	195	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	103	111	anti-parallel
Strand 3	A	60	65	anti-parallel
Strand 4	A	152	153	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	144	first strand
Strand 2	A	204	207	anti-parallel
Strand 3	A	174	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	216	first strand
Strand 2	A	222	228	anti-parallel
Strand 3	A	263	269	parallel
Strand 4	A	283	288	parallel
Strand 5	A	277	279	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	A	456	458	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	503	first strand
Strand 2	A	606	611	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	521	first strand
Strand 2	A	528	530	anti-parallel
Strand 3	A	536	539	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	563	first strand
Strand 2	A	555	559	anti-parallel
Strand 3	A	583	589	anti-parallel
Strand 4	A	592	598	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	83	90	anti-parallel
Strand 3	B	117	125	anti-parallel
Strand 4	B	48	56	anti-parallel
Strand 5	B	34	43	anti-parallel
Strand 6	B	162	168	parallel
Strand 7	B	188	191	anti-parallel
Strand 8	B	181	185	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	83	90	anti-parallel
Strand 3	B	117	125	anti-parallel
Strand 4	B	48	56	anti-parallel
Strand 5	B	34	43	anti-parallel
Strand 6	B	162	168	parallel
Strand 7	B	194	195	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	103	111	anti-parallel
Strand 3	B	60	65	anti-parallel
Strand 4	B	152	153	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	144	first strand
Strand 2	B	204	207	anti-parallel
Strand 3	B	174	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	216	first strand
Strand 2	B	222	228	anti-parallel
Strand 3	B	263	269	parallel
Strand 4	B	283	288	parallel
Strand 5	B	277	279	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	321	first strand
Strand 2	B	456	458	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	503	first strand
Strand 2	B	606	611	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	521	first strand
Strand 2	B	528	530	anti-parallel
Strand 3	B	536	539	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	562	563	first strand
Strand 2	B	555	559	anti-parallel
Strand 3	B	583	589	anti-parallel
Strand 4	B	592	598	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	83	90	anti-parallel
Strand 3	C	117	125	anti-parallel
Strand 4	C	48	56	anti-parallel
Strand 5	C	34	43	anti-parallel
Strand 6	C	162	168	parallel
Strand 7	C	188	191	anti-parallel
Strand 8	C	181	185	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	83	90	anti-parallel
Strand 3	C	117	125	anti-parallel
Strand 4	C	48	56	anti-parallel
Strand 5	C	34	43	anti-parallel
Strand 6	C	162	168	parallel
Strand 7	C	194	195	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	103	111	anti-parallel
Strand 3	C	60	65	anti-parallel
Strand 4	C	152	153	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	144	first strand
Strand 2	C	204	207	anti-parallel
Strand 3	C	174	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	216	first strand
Strand 2	C	222	228	anti-parallel
Strand 3	C	263	269	parallel
Strand 4	C	283	288	parallel
Strand 5	C	277	279	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	321	first strand
Strand 2	C	456	458	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	503	first strand
Strand 2	C	606	611	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	520	521	first strand
Strand 2	C	528	530	anti-parallel
Strand 3	C	536	539	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	562	563	first strand
Strand 2	C	555	559	anti-parallel
Strand 3	C	583	589	anti-parallel
Strand 4	C	592	598	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	83	90	anti-parallel
Strand 3	D	117	125	anti-parallel
Strand 4	D	48	56	anti-parallel
Strand 5	D	34	43	anti-parallel
Strand 6	D	162	168	parallel
Strand 7	D	188	191	anti-parallel
Strand 8	D	181	185	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	83	90	anti-parallel
Strand 3	D	117	125	anti-parallel
Strand 4	D	48	56	anti-parallel
Strand 5	D	34	43	anti-parallel
Strand 6	D	162	168	parallel
Strand 7	D	194	195	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	103	111	anti-parallel
Strand 3	D	60	65	anti-parallel
Strand 4	D	152	153	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	144	first strand
Strand 2	D	204	207	anti-parallel
Strand 3	D	174	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	216	first strand
Strand 2	D	222	228	anti-parallel
Strand 3	D	263	269	parallel
Strand 4	D	283	288	parallel
Strand 5	D	277	279	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	319	321	first strand
Strand 2	D	456	458	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	498	503	first strand
Strand 2	D	606	611	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	520	521	first strand
Strand 2	D	528	530	anti-parallel
Strand 3	D	536	539	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	562	563	first strand
Strand 2	D	555	559	anti-parallel
Strand 3	D	583	589	anti-parallel
Strand 4	D	592	598	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J9D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9D