Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J9F entry

There are 4 chains in PDB entry 8J9F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 5	GLY 753
B	ARG 5	GLY 753
C	ARG 5	GLY 753
D	ARG 5	GLY 753

There are122 helices in PDB entry 8J9F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	13	Right-handed alpha
Helix 2	AA2	A	15	23	Right-handed alpha
Helix 3	AA3	A	34	38	Right-handed 310
Helix 4	AA4	A	74	80	Right-handed alpha
Helix 5	AA5	A	83	101	Right-handed alpha
Helix 6	AA6	A	119	125	Right-handed 310
Helix 7	AA7	A	129	147	Right-handed alpha
Helix 8	AA8	A	173	180	Right-handed alpha
Helix 9	AA9	A	180	193	Right-handed alpha
Helix 10	AB1	A	212	217	Right-handed alpha
Helix 11	AB2	A	239	247	Right-handed alpha
Helix 12	AB3	A	255	268	Right-handed alpha
Helix 13	AB4	A	272	294	Right-handed alpha
Helix 14	AB5	A	301	316	Right-handed alpha
Helix 15	AB6	A	340	343	Right-handed 310
Helix 16	AB7	A	362	372	Right-handed alpha
Helix 17	AB8	A	391	405	Right-handed alpha
Helix 18	AB9	A	415	419	Right-handed 310
Helix 19	AC1	A	431	445	Right-handed alpha
Helix 20	AC2	A	462	466	Right-handed 310
Helix 21	AC3	A	478	489	Right-handed alpha
Helix 22	AC4	A	504	508	Right-handed 310
Helix 23	AC5	A	510	514	Right-handed 310
Helix 24	AC6	A	530	538	Right-handed alpha
Helix 25	AC7	A	629	634	Right-handed alpha
Helix 26	AC8	A	684	690	Right-handed 310
Helix 27	AC9	A	691	701	Right-handed alpha
Helix 28	AD1	A	712	714	Right-handed 310
Helix 29	AD2	A	715	726	Right-handed alpha
Helix 30	AD3	A	728	735	Right-handed 310
Helix 31	AD4	A	740	753	Right-handed alpha
Helix 32	AD5	B	6	13	Right-handed alpha
Helix 33	AD6	B	15	23	Right-handed alpha
Helix 34	AD7	B	34	38	Right-handed 310
Helix 35	AD8	B	74	80	Right-handed alpha
Helix 36	AD9	B	83	101	Right-handed alpha
Helix 37	AE1	B	119	125	Right-handed 310
Helix 38	AE2	B	129	147	Right-handed alpha
Helix 39	AE3	B	173	180	Right-handed alpha
Helix 40	AE4	B	180	193	Right-handed alpha
Helix 41	AE5	B	208	211	Right-handed 310
Helix 42	AE6	B	212	217	Right-handed alpha
Helix 43	AE7	B	239	247	Right-handed alpha
Helix 44	AE8	B	256	268	Right-handed alpha
Helix 45	AE9	B	272	293	Right-handed alpha
Helix 46	AF1	B	301	315	Right-handed alpha
Helix 47	AF2	B	340	343	Right-handed 310
Helix 48	AF3	B	362	372	Right-handed alpha
Helix 49	AF4	B	391	405	Right-handed alpha
Helix 50	AF5	B	415	419	Right-handed 310
Helix 51	AF6	B	431	445	Right-handed alpha
Helix 52	AF7	B	462	466	Right-handed 310
Helix 53	AF8	B	478	489	Right-handed alpha
Helix 54	AF9	B	504	508	Right-handed 310
Helix 55	AG1	B	510	514	Right-handed 310
Helix 56	AG2	B	530	538	Right-handed alpha
Helix 57	AG3	B	629	634	Right-handed alpha
Helix 58	AG4	B	685	690	Right-handed 310
Helix 59	AG5	B	691	699	Right-handed alpha
Helix 60	AG6	B	715	726	Right-handed alpha
Helix 61	AG7	B	727	735	Right-handed 310
Helix 62	AG8	B	740	752	Right-handed alpha
Helix 63	AG9	C	6	13	Right-handed alpha
Helix 64	AH1	C	15	23	Right-handed alpha
Helix 65	AH2	C	34	38	Right-handed 310
Helix 66	AH3	C	74	80	Right-handed alpha
Helix 67	AH4	C	83	101	Right-handed alpha
Helix 68	AH5	C	119	125	Right-handed 310
Helix 69	AH6	C	129	147	Right-handed alpha
Helix 70	AH7	C	173	180	Right-handed alpha
Helix 71	AH8	C	180	193	Right-handed alpha
Helix 72	AH9	C	212	217	Right-handed alpha
Helix 73	AI1	C	239	247	Right-handed alpha
Helix 74	AI2	C	255	268	Right-handed alpha
Helix 75	AI3	C	272	293	Right-handed alpha
Helix 76	AI4	C	301	315	Right-handed alpha
Helix 77	AI5	C	340	343	Right-handed 310
Helix 78	AI6	C	362	372	Right-handed alpha
Helix 79	AI7	C	391	405	Right-handed alpha
Helix 80	AI8	C	431	445	Right-handed alpha
Helix 81	AI9	C	462	466	Right-handed 310
Helix 82	AJ1	C	475	477	Right-handed 310
Helix 83	AJ2	C	478	489	Right-handed alpha
Helix 84	AJ3	C	504	508	Right-handed 310
Helix 85	AJ4	C	510	514	Right-handed 310
Helix 86	AJ5	C	530	537	Right-handed alpha
Helix 87	AJ6	C	629	634	Right-handed alpha
Helix 88	AJ7	C	684	690	Right-handed 310
Helix 89	AJ8	C	691	704	Right-handed alpha
Helix 90	AJ9	C	715	726	Right-handed alpha
Helix 91	AK1	C	727	735	Right-handed 310
Helix 92	AK2	C	740	753	Right-handed alpha
Helix 93	AK3	D	6	13	Right-handed alpha
Helix 94	AK4	D	15	23	Right-handed alpha
Helix 95	AK5	D	34	38	Right-handed 310
Helix 96	AK6	D	74	80	Right-handed alpha
Helix 97	AK7	D	83	101	Right-handed alpha
Helix 98	AK8	D	119	125	Right-handed 310
Helix 99	AK9	D	129	147	Right-handed alpha
Helix 100	AL1	D	173	180	Right-handed alpha
Helix 101	AL2	D	180	193	Right-handed alpha
Helix 102	AL3	D	208	211	Right-handed 310
Helix 103	AL4	D	212	217	Right-handed alpha
Helix 104	AL5	D	239	247	Right-handed alpha
Helix 105	AL6	D	256	268	Right-handed alpha
Helix 106	AL7	D	272	294	Right-handed alpha
Helix 107	AL8	D	301	315	Right-handed alpha
Helix 108	AL9	D	340	343	Right-handed 310
Helix 109	AM1	D	362	372	Right-handed alpha
Helix 110	AM2	D	391	405	Right-handed alpha
Helix 111	AM3	D	431	445	Right-handed alpha
Helix 112	AM4	D	462	466	Right-handed 310
Helix 113	AM5	D	478	489	Right-handed alpha
Helix 114	AM6	D	504	508	Right-handed 310
Helix 115	AM7	D	510	514	Right-handed 310
Helix 116	AM8	D	530	538	Right-handed alpha
Helix 117	AM9	D	629	634	Right-handed alpha
Helix 118	AN1	D	684	690	Right-handed 310
Helix 119	AN2	D	691	705	Right-handed alpha
Helix 120	AN3	D	715	726	Right-handed alpha
Helix 121	AN4	D	727	734	Right-handed 310
Helix 122	AN5	D	740	752	Right-handed alpha

There are 24 sheets in PDB entry 8J9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	105	107	parallel
Strand 3	A	150	156	parallel
Strand 4	A	196	199	parallel
Strand 5	A	229	231	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	203	204	anti-parallel
Strand 3	A	169	171	parallel
Strand 4	A	521	522	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	322	first strand
Strand 2	A	468	471	anti-parallel
Strand 3	A	448	453	parallel
Strand 4	A	407	413	parallel
Strand 5	A	334	338	parallel
Strand 6	A	376	380	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	554	561	first strand
Strand 2	A	572	580	anti-parallel
Strand 3	A	621	628	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	567	first strand
Strand 2	A	661	670	parallel
Strand 3	A	648	655	anti-parallel
Strand 4	A	586	596	anti-parallel
Strand 5	A	607	616	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	635	637	first strand
Strand 2	A	642	644	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	105	107	parallel
Strand 3	B	150	156	parallel
Strand 4	B	196	199	parallel
Strand 5	B	229	231	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	169	171	parallel
Strand 3	B	521	522	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	322	first strand
Strand 2	B	468	471	anti-parallel
Strand 3	B	448	453	parallel
Strand 4	B	407	413	parallel
Strand 5	B	333	338	parallel
Strand 6	B	375	380	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	561	first strand
Strand 2	B	572	580	anti-parallel
Strand 3	B	621	628	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	567	first strand
Strand 2	B	661	670	parallel
Strand 3	B	648	655	anti-parallel
Strand 4	B	586	596	anti-parallel
Strand 5	B	607	616	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	637	first strand
Strand 2	B	642	644	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	46	first strand
Strand 2	C	105	107	parallel
Strand 3	C	150	156	parallel
Strand 4	C	196	199	parallel
Strand 5	C	229	231	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	203	204	anti-parallel
Strand 3	C	169	171	parallel
Strand 4	C	521	522	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	322	first strand
Strand 2	C	468	471	anti-parallel
Strand 3	C	448	453	parallel
Strand 4	C	407	413	parallel
Strand 5	C	334	338	parallel
Strand 6	C	376	380	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	554	561	first strand
Strand 2	C	572	580	anti-parallel
Strand 3	C	621	628	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	565	567	first strand
Strand 2	C	661	670	parallel
Strand 3	C	648	655	anti-parallel
Strand 4	C	586	596	anti-parallel
Strand 5	C	607	616	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	635	637	first strand
Strand 2	C	642	644	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	46	first strand
Strand 2	D	105	107	parallel
Strand 3	D	150	156	parallel
Strand 4	D	196	199	parallel
Strand 5	D	229	232	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	204	first strand
Strand 2	D	169	171	parallel
Strand 3	D	521	522	parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	322	first strand
Strand 2	D	468	471	anti-parallel
Strand 3	D	448	453	parallel
Strand 4	D	407	413	parallel
Strand 5	D	334	338	parallel
Strand 6	D	376	380	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	555	561	first strand
Strand 2	D	572	579	anti-parallel
Strand 3	D	621	628	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	565	567	first strand
Strand 2	D	661	670	parallel
Strand 3	D	648	655	anti-parallel
Strand 4	D	586	596	anti-parallel
Strand 5	D	607	616	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	635	637	first strand
Strand 2	D	642	644	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J9F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9F