Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J9G entry

There are 4 chains in PDB entry 8J9G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 507
B	MET 1	GLU 450
E	U 1	A 12
F	DT 12	A 23

There are 25 helices in PDB entry 8J9G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	17	Right-handed 310
Helix 2	AA2	A	22	30	Right-handed alpha
Helix 3	AA3	A	46	62	Right-handed alpha
Helix 4	AA4	A	77	82	Right-handed alpha
Helix 5	AA5	A	109	132	Right-handed alpha
Helix 6	AA6	A	206	216	Right-handed alpha
Helix 7	AA7	A	248	263	Right-handed alpha
Helix 8	AA8	A	331	351	Right-handed alpha
Helix 9	AA9	A	367	372	Right-handed alpha
Helix 10	AB1	A	451	464	Right-handed alpha
Helix 11	AB2	A	477	493	Right-handed alpha
Helix 12	AB3	B	16	29	Right-handed alpha
Helix 13	AB4	B	45	51	Right-handed alpha
Helix 14	AB5	B	51	56	Right-handed alpha
Helix 15	AB6	B	71	89	Right-handed alpha
Helix 16	AB7	B	123	138	Right-handed alpha
Helix 17	AB8	B	147	158	Right-handed alpha
Helix 18	AB9	B	234	238	Right-handed 310
Helix 19	AC1	B	243	247	Right-handed alpha
Helix 20	AC2	B	257	272	Right-handed alpha
Helix 21	AC3	B	272	277	Right-handed alpha
Helix 22	AC4	B	300	304	Right-handed 310
Helix 23	AC5	B	353	365	Right-handed alpha
Helix 24	AC6	B	369	385	Right-handed alpha
Helix 25	AC7	B	436	450	Right-handed alpha

There are 11 sheets in PDB entry 8J9G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	B	409	414	parallel
Strand 3	B	166	172	anti-parallel
Strand 4	A	397	398	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	409	412	anti-parallel
Strand 3	A	417	420	anti-parallel
Strand 4	A	441	447	anti-parallel
Strand 5	A	385	389	anti-parallel
Strand 6	A	360	361	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	A	12	14	anti-parallel
Strand 3	A	270	271	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	42	45	parallel
Strand 3	A	139	142	parallel
Strand 4	A	223	224	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	299	300	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	297	first strand
Strand 2	A	318	319	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	5	8	parallel
Strand 3	B	59	62	parallel
Strand 4	B	94	96	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	292	294	anti-parallel
Strand 3	B	317	328	anti-parallel
Strand 4	B	311	314	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	292	294	anti-parallel
Strand 3	B	317	328	anti-parallel
Strand 4	B	334	344	anti-parallel
Strand 5	B	175	180	anti-parallel
Strand 6	B	400	404	anti-parallel
Strand 7	B	390	394	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	187	first strand
Strand 2	B	239	242	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	209	first strand
Strand 2	B	214	215	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J9G

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9G