Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J9K entry

There are 3 chains in PDB entry 8J9K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLY 6	LYS 399
B	ASP 25	ALA 130
D	SER 26	SER 150

There are 7 helices in PDB entry 8J9K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	46	50	Right-handed 310
Helix 2	AA2	C	73	77	Right-handed 310
Helix 3	AA3	C	99	109	Right-handed alpha
Helix 4	AA4	C	160	162	Right-handed 310
Helix 5	AA5	B	103	107	Right-handed 310
Helix 6	AA6	D	88	91	Right-handed 310
Helix 7	AA7	D	113	117	Right-handed 310

There are 12 sheets in PDB entry 8J9K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	118	first strand
Strand 2	C	38	44	anti-parallel
Strand 3	C	19	23	anti-parallel
Strand 4	C	7	13	anti-parallel
Strand 5	C	388	392	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	164	173	parallel
Strand 3	C	141	152	anti-parallel
Strand 4	C	53	62	anti-parallel
Strand 5	C	78	86	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	164	173	parallel
Strand 3	C	141	152	anti-parallel
Strand 4	C	129	131	anti-parallel
Strand 5	C	289	291	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	190	first strand
Strand 2	C	198	205	anti-parallel
Strand 3	C	216	223	anti-parallel
Strand 4	C	269	276	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	211	first strand
Strand 2	C	341	346	parallel
Strand 3	C	320	331	anti-parallel
Strand 4	C	239	242	anti-parallel
Strand 5	C	250	251	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	211	first strand
Strand 2	C	341	346	parallel
Strand 3	C	320	331	anti-parallel
Strand 4	C	230	236	anti-parallel
Strand 5	C	257	260	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	43	49	anti-parallel
Strand 3	B	95	99	anti-parallel
Strand 4	B	89	90	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	36	first strand
Strand 2	B	127	130	parallel
Strand 3	B	108	114	anti-parallel
Strand 4	B	57	62	anti-parallel
Strand 5	B	69	73	anti-parallel
Strand 6	B	77	78	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	36	first strand
Strand 2	B	127	130	parallel
Strand 3	B	108	114	anti-parallel
Strand 4	B	122	123	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	33	first strand
Strand 2	D	43	49	anti-parallel
Strand 3	D	104	110	anti-parallel
Strand 4	D	94	99	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	86	first strand
Strand 2	D	71	77	anti-parallel
Strand 3	D	60	65	anti-parallel
Strand 4	D	119	124	anti-parallel
Strand 5	D	139	140	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	86	first strand
Strand 2	D	71	77	anti-parallel
Strand 3	D	60	65	anti-parallel
Strand 4	D	119	124	anti-parallel
Strand 5	D	144	145	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J9K

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9K