Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J9N entry

There are 5 chains in PDB entry 8J9N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 275	ARG 636
C	GLN 12	VAL 394
D	LEU 4	ASN 340
E	THR 30	ARG 86
N	GLN 24	VAL 149

There are 27 helices in PDB entry 8J9N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	277	281	Right-handed 310
Helix 2	AA2	B	312	344	Right-handed alpha
Helix 3	AA3	B	352	376	Right-handed alpha
Helix 4	AA4	B	399	432	Right-handed alpha
Helix 5	AA5	B	443	466	Right-handed alpha
Helix 6	AA6	B	484	489	Right-handed alpha
Helix 7	AA7	B	491	524	Right-handed alpha
Helix 8	AA8	B	527	573	Right-handed alpha
Helix 9	AA9	B	599	609	Right-handed alpha
Helix 10	AB1	B	611	616	Right-handed alpha
Helix 11	AB2	B	617	621	Right-handed 310
Helix 12	AB3	B	623	636	Right-handed alpha
Helix 13	AB4	C	17	36	Right-handed alpha
Helix 14	AB5	C	234	238	Right-handed 310
Helix 15	AB6	C	253	265	Right-handed 310
Helix 16	AB7	C	266	279	Right-handed alpha
Helix 17	AB8	C	280	283	Right-handed 310
Helix 18	AB9	C	293	303	Right-handed alpha
Helix 19	AC1	C	307	312	Right-handed alpha
Helix 20	AC2	C	313	316	Right-handed 310
Helix 21	AC3	C	331	353	Right-handed alpha
Helix 22	AC4	C	371	391	Right-handed alpha
Helix 23	AC5	D	5	26	Right-handed alpha
Helix 24	AC6	D	29	35	Right-handed alpha
Helix 25	AC7	E	35	47	Right-handed alpha
Helix 26	AC8	E	53	68	Right-handed alpha
Helix 27	AC9	N	110	114	Right-handed 310

There are 11 sheets in PDB entry 8J9N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	470	first strand
Strand 2	B	477	479	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	214	first strand
Strand 2	C	217	224	anti-parallel
Strand 3	C	43	45	parallel
Strand 4	C	243	249	parallel
Strand 5	C	286	292	parallel
Strand 6	C	359	363	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	52	first strand
Strand 2	D	335	339	anti-parallel
Strand 3	D	327	331	anti-parallel
Strand 4	D	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	63	first strand
Strand 2	D	69	74	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	91	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	105	first strand
Strand 2	D	111	116	anti-parallel
Strand 3	D	120	125	anti-parallel
Strand 4	D	135	140	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	153	first strand
Strand 2	D	156	161	anti-parallel
Strand 3	D	165	169	anti-parallel
Strand 4	D	176	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	192	first strand
Strand 2	D	198	203	anti-parallel
Strand 3	D	207	212	anti-parallel
Strand 4	D	218	223	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	233	first strand
Strand 2	D	242	245	anti-parallel
Strand 3	D	250	252	anti-parallel
Strand 4	D	262	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	277	first strand
Strand 2	D	286	289	anti-parallel
Strand 3	D	294	296	anti-parallel
Strand 4	D	306	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	26	29	first strand
Strand 2	N	43	48	anti-parallel
Strand 3	N	101	104	anti-parallel
Strand 4	N	93	96	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	68	69	first strand
Strand 2	N	61	62	anti-parallel
Strand 3	N	115	117	anti-parallel
Strand 4	N	145	147	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J9N

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9N