Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J9O entry

There are 4 chains in PDB entry 8J9O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 277	ARG 636
B	GLU 4	LYS 228
C	GLN 1	SER 120
D	ASP 2	ARG 213

There are 25 helices in PDB entry 8J9O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	312	344	Right-handed alpha
Helix 2	AA2	A	353	371	Right-handed alpha
Helix 3	AA3	A	399	431	Right-handed alpha
Helix 4	AA4	A	436	441	Right-handed alpha
Helix 5	AA5	A	443	450	Right-handed alpha
Helix 6	AA6	A	453	462	Right-handed alpha
Helix 7	AA7	A	491	514	Right-handed alpha
Helix 8	AA8	A	1002	1025	Right-handed alpha
Helix 9	AA9	A	1027	1048	Right-handed alpha
Helix 10	AB1	A	1064	1068	Right-handed alpha
Helix 11	AB2	A	1069	1085	Right-handed alpha
Helix 12	AB3	A	1088	1098	Right-handed alpha
Helix 13	AB4	A	1098	1104	Right-handed alpha
Helix 14	AB5	A	1108	1118	Right-handed alpha
Helix 15	AB6	A	531	556	Right-handed alpha
Helix 16	AB7	A	561	574	Right-handed alpha
Helix 17	AB8	A	599	609	Right-handed alpha
Helix 18	AB9	A	611	622	Right-handed alpha
Helix 19	AC1	A	623	636	Right-handed alpha
Helix 20	AC2	B	65	68	Right-handed 310
Helix 21	AC3	B	90	94	Right-handed 310
Helix 22	AC4	B	107	112	Right-handed alpha
Helix 23	AC5	D	94	98	Right-handed 310
Helix 24	AC6	D	123	130	Right-handed alpha
Helix 25	AC7	D	184	189	Right-handed alpha

There are 15 sheets in PDB entry 8J9O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	290	first strand
Strand 2	A	293	294	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	382	first strand
Strand 2	A	392	393	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	477	478	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	10	first strand
Strand 2	B	22	28	anti-parallel
Strand 3	B	81	85	anti-parallel
Strand 4	B	72	76	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	15	first strand
Strand 2	B	121	125	parallel
Strand 3	B	95	102	anti-parallel
Strand 4	B	36	42	anti-parallel
Strand 5	B	48	55	anti-parallel
Strand 6	B	60	63	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	138	first strand
Strand 2	B	149	159	anti-parallel
Strand 3	B	190	199	anti-parallel
Strand 4	B	183	184	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	168	first strand
Strand 2	B	209	214	anti-parallel
Strand 3	B	222	224	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	17	23	anti-parallel
Strand 3	C	78	84	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	43	51	anti-parallel
Strand 3	C	33	40	anti-parallel
Strand 4	C	92	99	anti-parallel
Strand 5	C	115	117	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	20	26	anti-parallel
Strand 3	D	71	76	anti-parallel
Strand 4	D	63	65	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	14	first strand
Strand 2	D	107	108	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	46	50	anti-parallel
Strand 3	D	34	39	anti-parallel
Strand 4	D	86	91	anti-parallel
Strand 5	D	99	100	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	46	50	anti-parallel
Strand 3	D	34	39	anti-parallel
Strand 4	D	86	91	anti-parallel
Strand 5	D	104	105	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	133	139	anti-parallel
Strand 3	D	177	182	anti-parallel
Strand 4	D	161	165	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	151	first strand
Strand 2	D	193	200	anti-parallel
Strand 3	D	208	212	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J9O

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9O