Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8J9Q entry

There are 3 chains in PDB entry 8J9Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1657LYS 1729
B
 GLY 1657LYS 1729
C
 GLY 1657LYS 1729
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 8J9Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1662 1666Right-handed 310
Helix 2
AA2
A
1692 1697Right-handed alpha
Helix 3
AA3
A
1714 1719Right-handed alpha
Helix 4
AA4
B
1662 1667Right-handed 310
Helix 5
AA5
B
1692 1697Right-handed alpha
Helix 6
AA6
B
1714 1719Right-handed alpha
Helix 7
AA7
C
1663 1668Right-handed alpha
Helix 8
AA8
C
1692 1697Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8J9Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1690 1691first strand
Strand 2
A
1672 1679anti-parallel
Strand 3
A
1704 1712anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1690 1691first strand
Strand 2
B
1672 1679anti-parallel
Strand 3
B
1704 1712anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1690 1691first strand
Strand 2
C
1672 1679anti-parallel
Strand 3
C
1704 1712anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il