Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J9T entry

There are 2 chains in PDB entry 8J9T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 33	LEU 525
B	ALA 33	LEU 525

There are 38 helices in PDB entry 8J9T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	55	Right-handed alpha
Helix 2	AA2	A	66	77	Right-handed alpha
Helix 3	AA3	A	83	93	Right-handed alpha
Helix 4	AA4	A	128	135	Right-handed alpha
Helix 5	AA5	A	164	170	Right-handed alpha
Helix 6	AA6	A	186	200	Right-handed alpha
Helix 7	AA7	A	204	209	Right-handed alpha
Helix 8	AA8	A	226	236	Right-handed alpha
Helix 9	AA9	A	269	283	Right-handed alpha
Helix 10	AB1	A	312	324	Right-handed alpha
Helix 11	AB2	A	346	389	Right-handed alpha
Helix 12	AB3	A	389	399	Right-handed alpha
Helix 13	AB4	A	402	413	Right-handed alpha
Helix 14	AB5	A	420	426	Right-handed alpha
Helix 15	AB6	A	427	429	Right-handed 310
Helix 16	AB7	A	451	460	Right-handed alpha
Helix 17	AB8	A	462	466	Right-handed 310
Helix 18	AB9	A	467	494	Right-handed alpha
Helix 19	AC1	A	494	514	Right-handed alpha
Helix 20	AC2	B	42	56	Right-handed alpha
Helix 21	AC3	B	66	77	Right-handed alpha
Helix 22	AC4	B	83	93	Right-handed alpha
Helix 23	AC5	B	128	135	Right-handed alpha
Helix 24	AC6	B	137	141	Right-handed 310
Helix 25	AC7	B	164	170	Right-handed alpha
Helix 26	AC8	B	186	200	Right-handed alpha
Helix 27	AC9	B	204	209	Right-handed alpha
Helix 28	AD1	B	226	236	Right-handed alpha
Helix 29	AD2	B	269	283	Right-handed alpha
Helix 30	AD3	B	312	324	Right-handed alpha
Helix 31	AD4	B	346	389	Right-handed alpha
Helix 32	AD5	B	389	400	Right-handed alpha
Helix 33	AD6	B	402	413	Right-handed alpha
Helix 34	AD7	B	420	427	Right-handed alpha
Helix 35	AD8	B	451	460	Right-handed alpha
Helix 36	AD9	B	462	467	Right-handed 310
Helix 37	AE1	B	468	494	Right-handed alpha
Helix 38	AE2	B	494	514	Right-handed alpha

There are 12 sheets in PDB entry 8J9T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	124	127	anti-parallel
Strand 3	A	103	106	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	154	156	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	333	first strand
Strand 2	A	237	243	anti-parallel
Strand 3	A	222	224	anti-parallel
Strand 4	A	520	522	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	250	first strand
Strand 2	A	257	263	anti-parallel
Strand 3	A	303	307	anti-parallel
Strand 4	A	289	294	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	338	first strand
Strand 2	A	341	344	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	416	first strand
Strand 2	A	447	449	anti-parallel
Strand 3	A	442	444	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	124	127	anti-parallel
Strand 3	B	103	106	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	154	156	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	333	first strand
Strand 2	B	237	243	anti-parallel
Strand 3	B	222	224	anti-parallel
Strand 4	B	520	522	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	250	first strand
Strand 2	B	257	263	anti-parallel
Strand 3	B	303	307	anti-parallel
Strand 4	B	289	294	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	338	first strand
Strand 2	B	341	344	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	416	first strand
Strand 2	B	447	449	anti-parallel
Strand 3	B	442	444	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J9T

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9T