Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8J9W entry

There are 6 chains in PDB entry 8J9W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 418	HIS 1192
B	TYR 418	HIS 1192
E	A 1	G 13
C	A 1	G 13
D	C 1	T 17
F	C 1	T 17

There are 67 helices in PDB entry 8J9W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	439	453	Right-handed alpha
Helix 2	AA2	A	496	501	Right-handed alpha
Helix 3	AA3	A	502	513	Right-handed alpha
Helix 4	AA4	A	522	528	Right-handed alpha
Helix 5	AA5	A	547	560	Right-handed alpha
Helix 6	AA6	A	560	566	Right-handed alpha
Helix 7	AA7	A	592	603	Right-handed alpha
Helix 8	AA8	A	616	620	Right-handed 310
Helix 9	AA9	A	621	631	Right-handed alpha
Helix 10	AB1	A	644	653	Right-handed alpha
Helix 11	AB2	A	657	665	Right-handed alpha
Helix 12	AB3	A	672	682	Right-handed alpha
Helix 13	AB4	A	687	707	Right-handed alpha
Helix 14	AB5	A	715	730	Right-handed alpha
Helix 15	AB6	A	738	749	Right-handed alpha
Helix 16	AB7	A	755	767	Right-handed alpha
Helix 17	AB8	A	806	814	Right-handed alpha
Helix 18	AB9	A	815	821	Right-handed alpha
Helix 19	AC1	A	842	847	Right-handed alpha
Helix 20	AC2	A	866	877	Right-handed alpha
Helix 21	AC3	A	882	893	Right-handed alpha
Helix 22	AC4	A	944	951	Right-handed alpha
Helix 23	AC5	A	953	958	Right-handed alpha
Helix 24	AC6	A	984	989	Right-handed alpha
Helix 25	AC7	A	997	1003	Right-handed alpha
Helix 26	AC8	A	1027	1075	Right-handed alpha
Helix 27	AC9	A	1081	1092	Right-handed alpha
Helix 28	AD1	A	1098	1102	Right-handed 310
Helix 29	AD2	A	1109	1118	Right-handed alpha
Helix 30	AD3	A	1122	1127	Right-handed alpha
Helix 31	AD4	A	1129	1133	Right-handed 310
Helix 32	AD5	A	1134	1160	Right-handed alpha
Helix 33	AD6	A	1166	1187	Right-handed alpha
Helix 34	AD7	B	428	432	Right-handed 310
Helix 35	AD8	B	439	452	Right-handed alpha
Helix 36	AD9	B	496	501	Right-handed alpha
Helix 37	AE1	B	502	513	Right-handed alpha
Helix 38	AE2	B	522	528	Right-handed alpha
Helix 39	AE3	B	547	560	Right-handed alpha
Helix 40	AE4	B	560	567	Right-handed alpha
Helix 41	AE5	B	592	603	Right-handed alpha
Helix 42	AE6	B	616	620	Right-handed 310
Helix 43	AE7	B	621	631	Right-handed alpha
Helix 44	AE8	B	644	653	Right-handed alpha
Helix 45	AE9	B	656	665	Right-handed alpha
Helix 46	AF1	B	672	682	Right-handed alpha
Helix 47	AF2	B	687	707	Right-handed alpha
Helix 48	AF3	B	715	729	Right-handed alpha
Helix 49	AF4	B	738	749	Right-handed alpha
Helix 50	AF5	B	755	767	Right-handed alpha
Helix 51	AF6	B	806	814	Right-handed alpha
Helix 52	AF7	B	815	821	Right-handed alpha
Helix 53	AF8	B	842	847	Right-handed alpha
Helix 54	AF9	B	866	877	Right-handed alpha
Helix 55	AG1	B	882	893	Right-handed alpha
Helix 56	AG2	B	942	951	Right-handed alpha
Helix 57	AG3	B	953	958	Right-handed alpha
Helix 58	AG4	B	984	990	Right-handed alpha
Helix 59	AG5	B	997	1004	Right-handed alpha
Helix 60	AG6	B	1027	1075	Right-handed alpha
Helix 61	AG7	B	1081	1092	Right-handed alpha
Helix 62	AG8	B	1098	1102	Right-handed 310
Helix 63	AG9	B	1109	1118	Right-handed alpha
Helix 64	AH1	B	1122	1127	Right-handed alpha
Helix 65	AH2	B	1129	1133	Right-handed 310
Helix 66	AH3	B	1134	1160	Right-handed alpha
Helix 67	AH4	B	1166	1187	Right-handed alpha

There are 16 sheets in PDB entry 8J9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	469	first strand
Strand 2	A	434	437	parallel
Strand 3	A	534	537	parallel
Strand 4	A	569	572	parallel
Strand 5	A	636	640	anti-parallel
Strand 6	A	684	686	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	577	580	first strand
Strand 2	A	610	613	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	737	first strand
Strand 2	A	802	805	anti-parallel
Strand 3	A	779	782	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	824	827	first strand
Strand 2	A	830	834	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	850	852	first strand
Strand 2	A	857	859	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	909	913	first strand
Strand 2	A	916	920	anti-parallel
Strand 3	A	1006	1009	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	922	925	first strand
Strand 2	A	931	936	anti-parallel
Strand 3	A	974	978	anti-parallel
Strand 4	A	960	965	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1014	1016	first strand
Strand 2	A	1022	1024	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	469	first strand
Strand 2	B	434	437	parallel
Strand 3	B	534	537	parallel
Strand 4	B	569	572	parallel
Strand 5	B	636	640	anti-parallel
Strand 6	B	684	686	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	577	580	first strand
Strand 2	B	610	613	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	736	737	first strand
Strand 2	B	802	805	anti-parallel
Strand 3	B	779	782	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	824	827	first strand
Strand 2	B	830	834	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	850	852	first strand
Strand 2	B	857	859	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	909	913	first strand
Strand 2	B	916	920	anti-parallel
Strand 3	B	1006	1009	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	922	926	first strand
Strand 2	B	931	936	anti-parallel
Strand 3	B	974	977	anti-parallel
Strand 4	B	962	965	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1014	1016	first strand
Strand 2	B	1022	1024	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8J9W

Analysis of interatomic Contacts of Structural Units in PDB entry:
8J9W