Analysis of interatomic Contacts of Structural Units in PDB entry:
8JA0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JA0 entry

There are 3 chains in PDB entry 8JA0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8ARG 1082
D
 MET 1GLN 87
B
 U 16 U 132
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8JA0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 89Right-handed alpha
Helix 2
AA2
A
93 97Right-handed 310
Helix 3
AA3
A
109 115Right-handed alpha
Helix 4
AA4
A
123 137Right-handed alpha
Helix 5
AA5
A
156 170Right-handed alpha
Helix 6
AA6
A
176 184Right-handed alpha
Helix 7
AA7
A
204 223Right-handed alpha
Helix 8
AA8
A
228 240Right-handed alpha
Helix 9
AA9
A
271 285Right-handed alpha
Helix 10
AB1
A
298 306Right-handed alpha
Helix 11
AB2
A
316 325Right-handed alpha
Helix 12
AB3
A
351 363Right-handed alpha
Helix 13
AB4
A
375 389Right-handed alpha
Helix 14
AB5
A
391 399Right-handed alpha
Helix 15
AB6
A
404 412Right-handed alpha
Helix 16
AB7
A
424 437Right-handed alpha
Helix 17
AB8
A
440 449Right-handed alpha
Helix 18
AB9
A
474 495Right-handed alpha
Helix 19
AC1
A
512 541Right-handed alpha
Helix 20
AC2
A
549 562Right-handed alpha
Helix 21
AC3
A
591 596Right-handed alpha
Helix 22
AC4
A
618 622Right-handed 310
Helix 23
AC5
A
629 640Right-handed alpha
Helix 24
AC6
A
645 650Right-handed alpha
Helix 25
AC7
A
660 667Right-handed alpha
Helix 26
AC8
A
671 684Right-handed alpha
Helix 27
AC9
A
700 711Right-handed alpha
Helix 28
AD1
A
722 732Right-handed alpha
Helix 29
AD2
A
734 750Right-handed alpha
Helix 30
AD3
A
778 789Right-handed alpha
Helix 31
AD4
A
802 814Right-handed alpha
Helix 32
AD5
A
817 821Right-handed 310
Helix 33
AD6
A
868 873Right-handed alpha
Helix 34
AD7
A
881 893Right-handed alpha
Helix 35
AD8
A
898 903Right-handed alpha
Helix 36
AD9
A
965 972Right-handed alpha
Helix 37
AE1
A
984 988Right-handed 310
Helix 38
AE2
D
13 19Right-handed alpha
Helix 39
AE3
D
20 23Right-handed 310
Helix 40
AE4
D
24 44Right-handed alpha
Helix 41
AE5
D
46 51Right-handed alpha
Helix 42
AE6
D
57 85Right-handed alpha
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There are 9 sheets in PDB entry 8JA0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
695 697first strand
Strand 2
A
500 505parallel
Strand 3
A
11 17parallel
Strand 4
A
21 29anti-parallel
Strand 5
A
35 45anti-parallel
Strand 6
A
831 832parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 268first strand
Strand 2
A
420 421anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
331 332anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 588first strand
Strand 2
A
603 605anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
858 863first strand
Strand 2
A
922 927anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
933 935first strand
Strand 2
A
940 942anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 964first strand
Strand 2
A
949 955anti-parallel
Strand 3
A
996 1001anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
977 978first strand
Strand 2
A
989 990anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1046 1050first strand
Strand 2
A
1030 1033anti-parallel
Strand 3
A
1015 1023anti-parallel
Strand 4
A
1005 1010anti-parallel
Strand 5
A
1057 1062anti-parallel
Strand 6
A
1071 1072anti-parallel
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