Analysis of interatomic Contacts of Structural Units in PDB entry:
8JA1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JA1 entry

There is 1 chain in PDB entry 8JA1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3LEU 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8JA1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 16Right-handed alpha
Helix 2
AA2
A
51 68Right-handed alpha
Helix 3
AA3
A
105 113Right-handed alpha
Helix 4
AA4
A
117 125Right-handed alpha
Helix 5
AA5
A
146 154Right-handed alpha
Helix 6
AA6
A
201 205Right-handed 310
Helix 7
AA7
A
211 233Right-handed alpha
Helix 8
AA8
A
250 260Right-handed alpha
Helix 9
AA9
A
279 283Right-handed 310
Helix 10
AB1
A
312 332Right-handed alpha
Helix 11
AB2
A
375 381Right-handed alpha
Helix 12
AB3
A
385 401Right-handed alpha
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There are 5 sheets in PDB entry 8JA1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
42 45anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
167 174anti-parallel
Strand 3
A
184 187anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
167 174anti-parallel
Strand 3
A
155 164anti-parallel
Strand 4
A
191 199anti-parallel
Strand 5
A
90 95anti-parallel
Strand 6
A
81 87anti-parallel
Strand 7
A
238 241parallel
Strand 8
A
244 245anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 309first strand
Strand 2
A
299 304anti-parallel
Strand 3
A
350 356parallel
Strand 4
A
285 291anti-parallel
Strand 5
A
269 275anti-parallel
Strand 6
A
382 383anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
371 372anti-parallel
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