Analysis of interatomic Contacts of Structural Units in PDB entry:
8JA3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JA3 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 8JA3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ARG 7LYS 357
U
 GLU 460LEU 462
U
 ARG 464ARG 464
U
 HIS 467CYS 468
I
 VAL 5GLN 115
M
 ASP 2GLU 106
A
 ARG 7LYS 357
V
 GLU 460LEU 462
V
 ARG 464ARG 464
V
 HIS 467CYS 468
H
 VAL 5GLN 115
L
 ASP 2GLU 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8JA3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
90 94Right-handed 310
Helix 2
AA2
B
98 109Right-handed alpha
Helix 3
AA3
B
159 161Right-handed 310
Helix 4
AA4
B
277 282Right-handed 310
Helix 5
AA5
I
65 68Right-handed 310
Helix 6
AA6
I
77 79Right-handed 310
Helix 7
AA7
I
90 94Right-handed 310
Helix 8
AA8
A
98 109Right-handed alpha
Helix 9
AA9
A
278 282Right-handed 310
Helix 10
AB1
H
31 35Right-handed 310
Helix 11
AB2
H
65 68Right-handed 310
Helix 12
AB3
H
77 79Right-handed 310
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There are 20 sheets in PDB entry 8JA3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
19 22anti-parallel
Strand 3
B
38 42anti-parallel
Strand 4
B
112 116anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
163 171parallel
Strand 3
B
144 150anti-parallel
Strand 4
B
53 60anti-parallel
Strand 5
B
78 84anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
288 290anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 187first strand
Strand 2
B
197 202anti-parallel
Strand 3
B
214 222anti-parallel
Strand 4
B
266 274anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
345 351parallel
Strand 3
B
316 327anti-parallel
Strand 4
B
231 242anti-parallel
Strand 5
B
246 258anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
7 10first strand
Strand 2
I
23 27anti-parallel
Strand 3
I
81 84anti-parallel
Strand 4
I
73 76anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
61 63first strand
Strand 2
I
48 55anti-parallel
Strand 3
I
36 42anti-parallel
Strand 4
I
98 102anti-parallel
Strand 5
I
112 113anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
5 8first strand
Strand 2
M
20 26anti-parallel
Strand 3
M
71 76anti-parallel
Strand 4
M
63 68anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
11 12first strand
Strand 2
M
104 105parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
54 55first strand
Strand 2
M
46 50anti-parallel
Strand 3
M
34 39anti-parallel
Strand 4
M
86 91anti-parallel
Strand 5
M
98 99anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 117first strand
Strand 2
A
37 41anti-parallel
Strand 3
A
19 22anti-parallel
Strand 4
A
8 12anti-parallel
Strand 5
V
465 466anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
164 171parallel
Strand 3
A
143 150anti-parallel
Strand 4
A
53 60anti-parallel
Strand 5
A
80 84anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
288 290anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
199 202anti-parallel
Strand 3
A
217 222anti-parallel
Strand 4
A
266 271anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
345 351parallel
Strand 3
A
316 327anti-parallel
Strand 4
A
231 242anti-parallel
Strand 5
A
246 258anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 10first strand
Strand 2
H
24 28anti-parallel
Strand 3
H
81 83anti-parallel
Strand 4
H
74 76anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
61 63first strand
Strand 2
H
49 54anti-parallel
Strand 3
H
37 42anti-parallel
Strand 4
H
96 101anti-parallel
Strand 5
H
112 113anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
6 8first strand
Strand 2
L
20 25anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 68anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 12first strand
Strand 2
L
104 105parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
54 55first strand
Strand 2
L
46 50anti-parallel
Strand 3
L
35 39anti-parallel
Strand 4
L
86 88anti-parallel
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