Analysis of interatomic Contacts of Structural Units in PDB entry:
8JA7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JA7 entry

There are 5 chains in PDB entry 8JA7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 19	GLY 302
B	GLY 2	VAL 272
E	CYS 26	PRO 468
C	MET 1	ALA 393
D	MET 1	ALA 393

There are 74 helices in PDB entry 8JA7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	52	Right-handed alpha
Helix 2	AA2	A	72	77	Right-handed alpha
Helix 3	AA3	A	79	113	Right-handed alpha
Helix 4	AA4	A	116	130	Right-handed alpha
Helix 5	AA5	A	133	143	Right-handed alpha
Helix 6	AA6	A	163	192	Right-handed alpha
Helix 7	AA7	A	195	206	Right-handed alpha
Helix 8	AA8	A	210	221	Right-handed alpha
Helix 9	AA9	A	221	237	Right-handed alpha
Helix 10	AB1	A	240	247	Right-handed alpha
Helix 11	AB2	A	255	266	Right-handed alpha
Helix 12	AB3	A	269	294	Right-handed alpha
Helix 13	AB4	B	3	31	Right-handed alpha
Helix 14	AB5	B	36	40	Right-handed 310
Helix 15	AB6	B	50	58	Right-handed alpha
Helix 16	AB7	B	62	94	Right-handed alpha
Helix 17	AB8	B	98	109	Right-handed alpha
Helix 18	AB9	B	110	113	Right-handed 310
Helix 19	AC1	B	114	129	Right-handed alpha
Helix 20	AC2	B	134	158	Right-handed alpha
Helix 21	AC3	B	159	161	Right-handed 310
Helix 22	AC4	B	162	172	Right-handed alpha
Helix 23	AC5	B	174	182	Right-handed alpha
Helix 24	AC6	B	187	204	Right-handed alpha
Helix 25	AC7	B	206	212	Right-handed alpha
Helix 26	AC8	B	220	227	Right-handed alpha
Helix 27	AC9	B	236	268	Right-handed alpha
Helix 28	AD1	E	43	55	Right-handed alpha
Helix 29	AD2	E	72	86	Right-handed alpha
Helix 30	AD3	E	100	105	Right-handed alpha
Helix 31	AD4	E	112	116	Right-handed 310
Helix 32	AD5	E	120	125	Right-handed alpha
Helix 33	AD6	E	130	135	Right-handed alpha
Helix 34	AD7	E	168	182	Right-handed alpha
Helix 35	AD8	E	195	209	Right-handed alpha
Helix 36	AD9	E	226	243	Right-handed alpha
Helix 37	AE1	E	252	256	Right-handed 310
Helix 38	AE2	E	257	267	Right-handed alpha
Helix 39	AE3	E	278	289	Right-handed alpha
Helix 40	AE4	E	300	304	Right-handed 310
Helix 41	AE5	E	318	328	Right-handed alpha
Helix 42	AE6	E	364	374	Right-handed alpha
Helix 43	AE7	E	377	386	Right-handed alpha
Helix 44	AE8	E	394	397	Right-handed 310
Helix 45	AE9	E	398	404	Right-handed alpha
Helix 46	AF1	E	407	417	Right-handed alpha
Helix 47	AF2	E	426	438	Right-handed alpha
Helix 48	AF3	E	445	463	Right-handed alpha
Helix 49	AF4	C	42	51	Right-handed alpha
Helix 50	AF5	C	72	76	Right-handed 310
Helix 51	AF6	C	92	104	Right-handed alpha
Helix 52	AF7	C	107	123	Right-handed alpha
Helix 53	AF8	C	131	135	Right-handed 310
Helix 54	AF9	C	136	150	Right-handed alpha
Helix 55	AG1	C	166	185	Right-handed alpha
Helix 56	AG2	C	194	202	Right-handed alpha
Helix 57	AG3	C	218	225	Right-handed alpha
Helix 58	AG4	C	228	235	Right-handed alpha
Helix 59	AG5	C	262	272	Right-handed alpha
Helix 60	AG6	C	294	299	Right-handed alpha
Helix 61	AG7	D	42	51	Right-handed alpha
Helix 62	AG8	D	92	104	Right-handed alpha
Helix 63	AG9	D	107	122	Right-handed alpha
Helix 64	AH1	D	123	128	Right-handed 310
Helix 65	AH2	D	131	135	Right-handed 310
Helix 66	AH3	D	136	151	Right-handed alpha
Helix 67	AH4	D	166	185	Right-handed alpha
Helix 68	AH5	D	194	202	Right-handed alpha
Helix 69	AH6	D	218	225	Right-handed alpha
Helix 70	AH7	D	228	235	Right-handed alpha
Helix 71	AH8	D	262	271	Right-handed alpha
Helix 72	AH9	D	283	285	Right-handed 310
Helix 73	AI1	D	296	300	Right-handed 310
Helix 74	AI2	D	331	336	Right-handed alpha

There are 14 sheets in PDB entry 8JA7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	69	first strand
Strand 2	E	33	40	parallel
Strand 3	E	93	97	parallel
Strand 4	E	350	356	anti-parallel
Strand 5	E	146	151	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	272	275	first strand
Strand 2	E	154	157	anti-parallel
Strand 3	E	332	334	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	23	first strand
Strand 2	C	4	12	anti-parallel
Strand 3	C	58	63	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	191	first strand
Strand 2	C	33	36	parallel
Strand 3	C	204	209	parallel
Strand 4	C	212	217	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	156	158	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	245	first strand
Strand 2	C	278	282	anti-parallel
Strand 3	C	377	379	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	248	first strand
Strand 2	C	251	254	anti-parallel
Strand 3	C	257	260	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	289	first strand
Strand 2	C	367	370	anti-parallel
Strand 3	C	304	308	anti-parallel
Strand 4	C	317	323	anti-parallel
Strand 5	C	350	356	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	27	first strand
Strand 2	D	4	10	anti-parallel
Strand 3	D	58	63	anti-parallel
Strand 4	D	66	67	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	189	first strand
Strand 2	D	32	36	parallel
Strand 3	D	205	207	parallel
Strand 4	D	216	217	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	81	first strand
Strand 2	D	156	158	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	258	first strand
Strand 2	D	252	254	anti-parallel
Strand 3	D	241	247	anti-parallel
Strand 4	D	278	282	anti-parallel
Strand 5	D	377	380	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	289	first strand
Strand 2	D	366	371	anti-parallel
Strand 3	D	305	313	anti-parallel
Strand 4	D	317	323	anti-parallel
Strand 5	D	351	352	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	289	first strand
Strand 2	D	366	371	anti-parallel
Strand 3	D	305	313	anti-parallel
Strand 4	D	317	323	anti-parallel
Strand 5	D	355	356	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JA7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JA7