Analysis of interatomic Contacts of Structural Units in PDB entry:
8JA8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JA8 entry

There is 1 chain in PDB entry 8JA8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 32MET 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8JA8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 56Right-handed alpha
Helix 2
AA2
A
72 86Right-handed alpha
Helix 3
AA3
A
100 107Right-handed alpha
Helix 4
AA4
A
112 116Right-handed 310
Helix 5
AA5
A
120 127Right-handed alpha
Helix 6
AA6
A
130 137Right-handed alpha
Helix 7
AA7
A
168 182Right-handed alpha
Helix 8
AA8
A
195 209Right-handed alpha
Helix 9
AA9
A
226 245Right-handed alpha
Helix 10
AB1
A
250 255Right-handed 310
Helix 11
AB2
A
260 267Right-handed alpha
Helix 12
AB3
A
277 290Right-handed alpha
Helix 13
AB4
A
296 304Right-handed 310
Helix 14
AB5
A
316 328Right-handed alpha
Helix 15
AB6
A
362 374Right-handed alpha
Helix 16
AB7
A
375 385Right-handed alpha
Helix 17
AB8
A
392 397Right-handed alpha
Helix 18
AB9
A
398 405Right-handed alpha
Helix 19
AC1
A
407 417Right-handed alpha
Helix 20
AC2
A
426 439Right-handed alpha
Helix 21
AC3
A
440 444Right-handed 310
Helix 22
AC4
A
445 462Right-handed alpha
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There are 3 sheets in PDB entry 8JA8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 69first strand
Strand 2
A
33 40parallel
Strand 3
A
93 97parallel
Strand 4
A
350 356anti-parallel
Strand 5
A
146 151anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
142 143anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
272 275parallel
Strand 3
A
154 157anti-parallel
Strand 4
A
332 334anti-parallel
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