Analysis of interatomic Contacts of Structural Units in PDB entry:
8JAG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JAG entry

There are 3 chains in PDB entry 8JAG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 18LEU 1127
H
 GLN 1SER 107
L
 VAL 1LYS 111
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8JAG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
281 290Right-handed alpha
Helix 2
AA2
A
325 330Right-handed alpha
Helix 3
AA3
A
336 340Right-handed 310
Helix 4
AA4
A
352 357Right-handed alpha
Helix 5
AA5
A
370 377Right-handed 310
Helix 6
AA6
A
391 395Right-handed alpha
Helix 7
AA7
A
403 409Right-handed alpha
Helix 8
AA8
A
488 491Right-handed 310
Helix 9
AA9
A
602 612Right-handed alpha
Helix 10
AB1
A
719 726Right-handed alpha
Helix 11
AB2
A
728 736Right-handed alpha
Helix 12
AB3
A
737 739Right-handed 310
Helix 13
AB4
A
740 765Right-handed alpha
Helix 14
AB5
A
798 808Right-handed alpha
Helix 15
AB6
A
848 867Right-handed alpha
Helix 16
AB7
A
868 870Right-handed 310
Helix 17
AB8
A
879 890Right-handed alpha
Helix 18
AB9
A
895 901Right-handed alpha
Helix 19
AC1
A
901 923Right-handed alpha
Helix 20
AC2
A
927 947Right-handed alpha
Helix 21
AC3
A
948 950Right-handed 310
Helix 22
AC4
A
959 964Right-handed alpha
Helix 23
AC5
A
967 1015Right-handed alpha
Helix 24
AC6
A
1122 1127Right-handed alpha
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There are 20 sheets in PDB entry 8JAG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
65 70anti-parallel
Strand 3
A
251 256anti-parallel
Strand 4
A
86 93anti-parallel
Strand 5
A
181 190anti-parallel
Strand 6
A
193 202anti-parallel
Strand 7
A
217 223anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 59first strand
Strand 2
A
258 266anti-parallel
Strand 3
A
272 277anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
230 235anti-parallel
Strand 3
A
98 104anti-parallel
Strand 4
A
113 118anti-parallel
Strand 5
A
122 128anti-parallel
Strand 6
A
161 167anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 137first strand
Strand 2
A
151 153anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
615 616first strand
Strand 2
A
298 307anti-parallel
Strand 3
A
578 585anti-parallel
Strand 4
A
595 598anti-parallel
Strand 5
A
634 637anti-parallel
Strand 6
A
628 631anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
524 528parallel
Strand 3
A
533 540anti-parallel
Strand 4
A
570 574anti-parallel
Strand 5
A
559 563anti-parallel
Strand 6
A
551 553anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 345first strand
Strand 2
A
382 390anti-parallel
Strand 3
A
493 501anti-parallel
Strand 4
A
419 424anti-parallel
Strand 5
A
363 366anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 349first strand
Strand 2
A
510 511parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 441first strand
Strand 2
A
478 480anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
640 646first strand
Strand 2
A
673 679parallel
Strand 3
A
656 661anti-parallel
Strand 4
A
650 653anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
693 697first strand
Strand 2
A
1054 1059anti-parallel
Strand 3
A
1076 1080anti-parallel
Strand 4
A
1083 1088anti-parallel
Strand 5
A
1091 1096anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
700 710first strand
Strand 2
A
1041 1051anti-parallel
Strand 3
A
1029 1038anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
715 718first strand
Strand 2
A
840 843anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
778 779first strand
Strand 2
A
782 783anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1102 1107first strand
Strand 2
A
1068 1072anti-parallel
Strand 3
A
1063 1065anti-parallel
Strand 4
A
1115 1116parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 6first strand
Strand 2
H
18 24anti-parallel
Strand 3
H
71 76anti-parallel
Strand 4
H
61 66anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
103 105parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
45 47first strand
Strand 2
H
34 39anti-parallel
Strand 3
H
88 91anti-parallel
Strand 4
H
97 98anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 23first strand
Strand 2
L
74 79anti-parallel
Strand 3
L
66 71anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
57 58first strand
Strand 2
L
48 53anti-parallel
Strand 3
L
38 42anti-parallel
Strand 4
L
88 93anti-parallel
Strand 5
L
106 108anti-parallel
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