Analysis of interatomic Contacts of Structural Units in PDB entry:
8JAH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JAH entry

There are 2 chains in PDB entry 8JAH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 132ASN 253
B
 PRO 132ASN 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8JAH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
153 164Right-handed alpha
Helix 2
AA2
A
173 184Right-handed alpha
Helix 3
AA3
A
206 209Right-handed 310
Helix 4
AA4
A
211 215Right-handed 310
Helix 5
AA5
B
153 164Right-handed alpha
Helix 6
AA6
B
173 184Right-handed alpha
Helix 7
AA7
B
206 209Right-handed 310
Helix 8
AA8
B
211 215Right-handed 310
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There are 4 sheets in PDB entry 8JAH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
143 147anti-parallel
Strand 3
A
245 251anti-parallel
Strand 4
A
167 168anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
143 147anti-parallel
Strand 3
A
245 251anti-parallel
Strand 4
A
189 190parallel
Strand 5
A
226 231anti-parallel
Strand 6
A
234 239anti-parallel
Strand 7
A
203 204anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 140first strand
Strand 2
B
143 147anti-parallel
Strand 3
B
245 251anti-parallel
Strand 4
B
167 168anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 140first strand
Strand 2
B
143 147anti-parallel
Strand 3
B
245 251anti-parallel
Strand 4
B
189 190parallel
Strand 5
B
226 231anti-parallel
Strand 6
B
234 239anti-parallel
Strand 7
B
203 204anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il