Analysis of interatomic Contacts of Structural Units in PDB entry:
8JAR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JAR entry

There are 9 chains in PDB entry 8JAR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 8GLN 578
C
 ASP 2GLN 106
D
 MET 17CYS 112
S
 LEU -5ALA 3
B
 GLU 7ASN 579
F
 LEU -5ALA 3
G
 ASP 2PRO 97
H
 MET 17CYS 112
E
 THR 1THR 1
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are105 helices in PDB entry 8JAR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 24Right-handed alpha
Helix 2
AA2
A
25 27Right-handed 310
Helix 3
AA3
A
28 33Right-handed alpha
Helix 4
AA4
A
36 50Right-handed alpha
Helix 5
AA5
A
52 61Right-handed alpha
Helix 6
AA6
A
62 71Right-handed alpha
Helix 7
AA7
A
75 90Right-handed alpha
Helix 8
AA8
A
92 109Right-handed alpha
Helix 9
AA9
A
112 134Right-handed alpha
Helix 10
AB1
A
135 152Right-handed alpha
Helix 11
AB2
A
155 173Right-handed alpha
Helix 12
AB3
A
178 198Right-handed alpha
Helix 13
AB4
A
205 219Right-handed alpha
Helix 14
AB5
A
221 235Right-handed alpha
Helix 15
AB6
A
241 259Right-handed alpha
Helix 16
AB7
A
261 280Right-handed alpha
Helix 17
AB8
A
284 300Right-handed alpha
Helix 18
AB9
A
303 322Right-handed alpha
Helix 19
AC1
A
326 344Right-handed alpha
Helix 20
AC2
A
350 368Right-handed alpha
Helix 21
AC3
A
372 391Right-handed alpha
Helix 22
AC4
A
395 421Right-handed alpha
Helix 23
AC5
A
425 442Right-handed alpha
Helix 24
AC6
A
444 463Right-handed alpha
Helix 25
AC7
A
467 484Right-handed alpha
Helix 26
AC8
A
487 507Right-handed alpha
Helix 27
AC9
A
511 526Right-handed alpha
Helix 28
AD1
A
529 551Right-handed alpha
Helix 29
AD2
A
566 577Right-handed alpha
Helix 30
AD3
C
23 36Right-handed alpha
Helix 31
AD4
C
38 40Right-handed 310
Helix 32
AD5
C
56 61Right-handed alpha
Helix 33
AD6
D
33 37Right-handed alpha
Helix 34
AD7
D
39 46Right-handed alpha
Helix 35
AD8
D
48 52Right-handed 310
Helix 36
AD9
D
66 83Right-handed alpha
Helix 37
AE1
D
99 111Right-handed alpha
Helix 38
AE2
B
12 23Right-handed alpha
Helix 39
AE3
B
31 35Right-handed 310
Helix 40
AE4
B
36 50Right-handed alpha
Helix 41
AE5
B
52 61Right-handed alpha
Helix 42
AE6
B
62 70Right-handed alpha
Helix 43
AE7
B
75 90Right-handed alpha
Helix 44
AE8
B
92 109Right-handed alpha
Helix 45
AE9
B
112 134Right-handed alpha
Helix 46
AF1
B
135 151Right-handed alpha
Helix 47
AF2
B
155 175Right-handed alpha
Helix 48
AF3
B
178 199Right-handed alpha
Helix 49
AF4
B
205 219Right-handed alpha
Helix 50
AF5
B
221 235Right-handed alpha
Helix 51
AF6
B
241 258Right-handed alpha
Helix 52
AF7
B
261 280Right-handed alpha
Helix 53
AF8
B
284 301Right-handed alpha
Helix 54
AF9
B
303 322Right-handed alpha
Helix 55
AG1
B
326 344Right-handed alpha
Helix 56
AG2
B
351 360Right-handed alpha
Helix 57
AG3
B
360 368Right-handed alpha
Helix 58
AG4
B
372 393Right-handed alpha
Helix 59
AG5
B
396 421Right-handed alpha
Helix 60
AG6
B
425 442Right-handed alpha
Helix 61
AG7
B
444 462Right-handed alpha
Helix 62
AG8
B
467 484Right-handed alpha
Helix 63
AG9
B
487 507Right-handed alpha
Helix 64
AH1
B
512 528Right-handed alpha
Helix 65
AH2
B
529 549Right-handed alpha
Helix 66
AH3
B
555 560Right-handed alpha
Helix 67
AH4
B
569 577Right-handed alpha
Helix 68
AH5
G
23 36Right-handed alpha
Helix 69
AH6
G
38 42Right-handed 310
Helix 70
AH7
H
32 37Right-handed alpha
Helix 71
AH8
H
39 47Right-handed alpha
Helix 72
AH9
H
53 55Right-handed 310
Helix 73
AI1
H
66 83Right-handed alpha
Helix 74
AI2
H
99 109Right-handed alpha
Helix 75
AI3
E
9 26Right-handed alpha
Helix 76
AI4
E
31 47Right-handed alpha
Helix 77
AI5
E
53 79Right-handed alpha
Helix 78
AI6
E
82 105Right-handed alpha
Helix 79
AI7
E
105 112Right-handed alpha
Helix 80
AI8
E
138 151Right-handed alpha
Helix 81
AI9
E
157 172Right-handed alpha
Helix 82
AJ1
E
177 191Right-handed alpha
Helix 83
AJ2
E
192 194Right-handed 310
Helix 84
AJ3
E
200 207Right-handed alpha
Helix 85
AJ4
E
207 229Right-handed alpha
Helix 86
AJ5
E
234 253Right-handed alpha
Helix 87
AJ6
E
255 257Right-handed 310
Helix 88
AJ7
E
258 271Right-handed alpha
Helix 89
AJ8
E
274 280Right-handed alpha
Helix 90
AJ9
I
9 25Right-handed alpha
Helix 91
AK1
I
26 28Right-handed 310
Helix 92
AK2
I
31 47Right-handed alpha
Helix 93
AK3
I
53 79Right-handed alpha
Helix 94
AK4
I
82 105Right-handed alpha
Helix 95
AK5
I
105 112Right-handed alpha
Helix 96
AK6
I
138 151Right-handed alpha
Helix 97
AK7
I
155 171Right-handed alpha
Helix 98
AK8
I
177 191Right-handed alpha
Helix 99
AK9
I
192 195Right-handed 310
Helix 100
AL1
I
200 205Right-handed alpha
Helix 101
AL2
I
207 218Right-handed alpha
Helix 102
AL3
I
218 226Right-handed alpha
Helix 103
AL4
I
234 254Right-handed alpha
Helix 104
AL5
I
255 257Right-handed 310
Helix 105
AL6
I
258 269Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8JAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 18first strand
Strand 2
C
3 7anti-parallel
Strand 3
C
73 79parallel
Strand 4
C
42 45anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 14first strand
Strand 2
D
28 32parallel
Strand 3
D
18 22anti-parallel
Strand 4
D
58 61parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
3 6first strand
Strand 2
G
15 18anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
49 50first strand
Strand 2
G
45 46anti-parallel
Strand 3
G
75 76anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
80 81first strand
Strand 2
G
84 85anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
18 22first strand
Strand 2
H
57 61parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il