Analysis of interatomic Contacts of Structural Units in PDB entry:
8JAV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JAV entry

There are 10 chains in PDB entry 8JAV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 7	GLN 578
E	THR 1	GLU 208
C	ASP 2	GLN 106
D	MET 17	CYS 112
S	GLN -5	GLN 1
B	GLU 7	GLN 578
F	GLN -5	GLN 1
G	ASP 2	PRO 100
H	MET 17	CYS 112
I	THR 1	THR 1

There are227 helices in PDB entry 8JAV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	24	Right-handed alpha
Helix 2	AA2	A	25	27	Right-handed 310
Helix 3	AA3	A	28	33	Right-handed alpha
Helix 4	AA4	A	36	50	Right-handed alpha
Helix 5	AA5	A	52	57	Right-handed alpha
Helix 6	AA6	A	62	67	Right-handed alpha
Helix 7	AA7	A	76	90	Right-handed alpha
Helix 8	AA8	A	92	109	Right-handed alpha
Helix 9	AA9	A	112	133	Right-handed alpha
Helix 10	AB1	A	135	152	Right-handed alpha
Helix 11	AB2	A	155	175	Right-handed alpha
Helix 12	AB3	A	178	199	Right-handed alpha
Helix 13	AB4	A	205	219	Right-handed alpha
Helix 14	AB5	A	221	236	Right-handed alpha
Helix 15	AB6	A	241	257	Right-handed alpha
Helix 16	AB7	A	261	280	Right-handed alpha
Helix 17	AB8	A	284	300	Right-handed alpha
Helix 18	AB9	A	303	322	Right-handed alpha
Helix 19	AC1	A	326	344	Right-handed alpha
Helix 20	AC2	A	350	368	Right-handed alpha
Helix 21	AC3	A	372	393	Right-handed alpha
Helix 22	AC4	A	395	421	Right-handed alpha
Helix 23	AC5	A	425	442	Right-handed alpha
Helix 24	AC6	A	444	464	Right-handed alpha
Helix 25	AC7	A	467	485	Right-handed alpha
Helix 26	AC8	A	487	506	Right-handed alpha
Helix 27	AC9	A	510	528	Right-handed alpha
Helix 28	AD1	A	529	551	Right-handed alpha
Helix 29	AD2	A	555	560	Right-handed alpha
Helix 30	AD3	A	566	578	Right-handed alpha
Helix 31	AD4	E	9	26	Right-handed alpha
Helix 32	AD5	E	31	47	Right-handed alpha
Helix 33	AD6	E	53	78	Right-handed alpha
Helix 34	AD7	E	82	105	Right-handed alpha
Helix 35	AD8	E	105	112	Right-handed alpha
Helix 36	AD9	E	138	151	Right-handed alpha
Helix 37	AE1	E	162	173	Right-handed alpha
Helix 38	AE2	E	177	186	Right-handed alpha
Helix 39	AE3	E	186	191	Right-handed alpha
Helix 40	AE4	E	200	207	Right-handed alpha
Helix 41	AE5	C	24	36	Right-handed alpha
Helix 42	AE6	D	33	37	Right-handed alpha
Helix 43	AE7	D	39	46	Right-handed alpha
Helix 44	AE8	D	66	83	Right-handed alpha
Helix 45	AE9	D	99	111	Right-handed alpha
Helix 46	AF1	B	12	23	Right-handed alpha
Helix 47	AF2	B	24	33	Right-handed alpha
Helix 48	AF3	B	36	50	Right-handed alpha
Helix 49	AF4	B	56	61	Right-handed alpha
Helix 50	AF5	B	62	71	Right-handed alpha
Helix 51	AF6	B	76	90	Right-handed alpha
Helix 52	AF7	B	92	109	Right-handed alpha
Helix 53	AF8	B	112	134	Right-handed alpha
Helix 54	AF9	B	136	151	Right-handed alpha
Helix 55	AG1	B	155	175	Right-handed alpha
Helix 56	AG2	B	178	198	Right-handed alpha
Helix 57	AG3	B	205	219	Right-handed alpha
Helix 58	AG4	B	221	236	Right-handed alpha
Helix 59	AG5	B	241	259	Right-handed alpha
Helix 60	AG6	B	263	280	Right-handed alpha
Helix 61	AG7	B	284	300	Right-handed alpha
Helix 62	AG8	B	303	322	Right-handed alpha
Helix 63	AG9	B	326	344	Right-handed alpha
Helix 64	AH1	B	352	368	Right-handed alpha
Helix 65	AH2	B	372	393	Right-handed alpha
Helix 66	AH3	B	396	422	Right-handed alpha
Helix 67	AH4	B	425	442	Right-handed alpha
Helix 68	AH5	B	444	464	Right-handed alpha
Helix 69	AH6	B	467	484	Right-handed alpha
Helix 70	AH7	B	487	506	Right-handed alpha
Helix 71	AH8	B	507	510	Right-handed 310
Helix 72	AH9	B	511	528	Right-handed alpha
Helix 73	AI1	B	529	550	Right-handed alpha
Helix 74	AI2	B	569	577	Right-handed alpha
Helix 75	AI3	G	23	36	Right-handed alpha
Helix 76	AI4	G	45	49	Right-handed 310
Helix 77	AI5	H	32	37	Right-handed alpha
Helix 78	AI6	H	39	47	Right-handed alpha
Helix 79	AI7	H	66	83	Right-handed alpha
Helix 80	AI8	H	99	110	Right-handed alpha
Helix 81	AI9	I	9	25	Right-handed alpha
Helix 82	AJ1	I	31	47	Right-handed alpha
Helix 83	AJ2	I	54	78	Right-handed alpha
Helix 84	AJ3	I	82	105	Right-handed alpha
Helix 85	AJ4	I	105	112	Right-handed alpha
Helix 86	AJ5	I	138	151	Right-handed alpha
Helix 87	AJ6	I	155	172	Right-handed alpha
Helix 88	AJ7	I	177	187	Right-handed alpha
Helix 89	AJ8	I	188	196	Right-handed 310
Helix 90	AJ9	I	198	200	Right-handed 310
Helix 91	AK1	I	201	207	Right-handed alpha
Helix 92	AK2	I	207	228	Right-handed alpha
Helix 93	AK3	I	231	254	Right-handed alpha
Helix 94	AK4	I	255	257	Right-handed 310
Helix 95	AK5	I	258	271	Right-handed alpha
Helix 96	AK6	I	274	287	Right-handed alpha
Helix 97	AK7	I	290	304	Right-handed alpha
Helix 98	AK8	I	307	327	Right-handed alpha
Helix 99	AK9	I	334	357	Right-handed alpha
Helix 100	AL1	I	361	377	Right-handed alpha
Helix 101	AL2	I	386	400	Right-handed alpha
Helix 102	AL3	I	407	424	Right-handed alpha
Helix 103	AL4	I	427	445	Right-handed alpha
Helix 104	AL5	I	450	465	Right-handed alpha
Helix 105	AL6	I	471	477	Right-handed alpha
Helix 106	AL7	I	479	496	Right-handed alpha
Helix 107	AL8	I	533	548	Right-handed alpha
Helix 108	AL9	I	556	560	Right-handed 310
Helix 109	AM1	I	578	591	Right-handed alpha
Helix 110	AM2	I	596	604	Right-handed alpha
Helix 111	AM3	I	606	621	Right-handed alpha
Helix 112	AM4	R	53	60	Right-handed alpha
Helix 113	AM5	R	64	68	Right-handed 310
Helix 114	AM6	R	81	91	Right-handed alpha
Helix 115	AM7	J	12	24	Right-handed alpha
Helix 116	AM8	J	24	29	Right-handed alpha
Helix 117	AM9	J	31	35	Right-handed 310
Helix 118	AN1	J	36	50	Right-handed alpha
Helix 119	AN2	J	52	61	Right-handed alpha
Helix 120	AN3	J	62	71	Right-handed alpha
Helix 121	AN4	J	72	74	Right-handed 310
Helix 122	AN5	J	75	88	Right-handed alpha
Helix 123	AN6	J	92	109	Right-handed alpha
Helix 124	AN7	J	112	133	Right-handed alpha
Helix 125	AN8	J	135	151	Right-handed alpha
Helix 126	AN9	J	155	175	Right-handed alpha
Helix 127	AO1	J	178	198	Right-handed alpha
Helix 128	AO2	J	205	219	Right-handed alpha
Helix 129	AO3	J	221	235	Right-handed alpha
Helix 130	AO4	J	241	259	Right-handed alpha
Helix 131	AO5	J	261	280	Right-handed alpha
Helix 132	AO6	J	284	300	Right-handed alpha
Helix 133	AO7	J	303	322	Right-handed alpha
Helix 134	AO8	J	326	344	Right-handed alpha
Helix 135	AO9	J	350	368	Right-handed alpha
Helix 136	AP1	J	372	393	Right-handed alpha
Helix 137	AP2	J	395	421	Right-handed alpha
Helix 138	AP3	J	425	440	Right-handed alpha
Helix 139	AP4	J	444	463	Right-handed alpha
Helix 140	AP5	J	467	484	Right-handed alpha
Helix 141	AP6	J	488	506	Right-handed alpha
Helix 142	AP7	J	510	512	Right-handed 310
Helix 143	AP8	J	513	522	Right-handed alpha
Helix 144	AP9	J	530	551	Right-handed alpha
Helix 145	AQ1	J	555	560	Right-handed alpha
Helix 146	AQ2	J	566	578	Right-handed alpha
Helix 147	AQ3	K	12	23	Right-handed alpha
Helix 148	AQ4	K	24	33	Right-handed alpha
Helix 149	AQ5	K	36	50	Right-handed alpha
Helix 150	AQ6	K	52	61	Right-handed alpha
Helix 151	AQ7	K	62	69	Right-handed alpha
Helix 152	AQ8	K	75	89	Right-handed alpha
Helix 153	AQ9	K	92	106	Right-handed alpha
Helix 154	AR1	K	114	134	Right-handed alpha
Helix 155	AR2	K	135	151	Right-handed alpha
Helix 156	AR3	K	155	173	Right-handed alpha
Helix 157	AR4	K	178	199	Right-handed alpha
Helix 158	AR5	K	206	219	Right-handed alpha
Helix 159	AR6	K	221	234	Right-handed alpha
Helix 160	AR7	K	241	259	Right-handed alpha
Helix 161	AR8	K	262	279	Right-handed alpha
Helix 162	AR9	K	284	301	Right-handed alpha
Helix 163	AS1	K	303	306	Right-handed 310
Helix 164	AS2	K	307	322	Right-handed alpha
Helix 165	AS3	K	326	344	Right-handed alpha
Helix 166	AS4	K	351	368	Right-handed alpha
Helix 167	AS5	K	372	393	Right-handed alpha
Helix 168	AS6	K	395	421	Right-handed alpha
Helix 169	AS7	K	425	442	Right-handed alpha
Helix 170	AS8	K	444	463	Right-handed alpha
Helix 171	AS9	K	467	484	Right-handed alpha
Helix 172	AT1	K	487	507	Right-handed alpha
Helix 173	AT2	K	510	512	Right-handed 310
Helix 174	AT3	K	513	526	Right-handed alpha
Helix 175	AT4	K	530	552	Right-handed alpha
Helix 176	AT5	K	555	560	Right-handed alpha
Helix 177	AT6	K	569	577	Right-handed alpha
Helix 178	AT7	L	9	26	Right-handed alpha
Helix 179	AT8	L	31	47	Right-handed alpha
Helix 180	AT9	L	53	78	Right-handed alpha
Helix 181	AU1	L	82	105	Right-handed alpha
Helix 182	AU2	L	105	112	Right-handed alpha
Helix 183	AU3	L	141	151	Right-handed alpha
Helix 184	AU4	L	151	156	Right-handed alpha
Helix 185	AU5	M	23	36	Right-handed alpha
Helix 186	AU6	M	56	61	Right-handed 310
Helix 187	AU7	M	63	67	Right-handed 310
Helix 188	AU8	N	33	37	Right-handed alpha
Helix 189	AU9	N	39	47	Right-handed alpha
Helix 190	AV1	N	66	83	Right-handed alpha
Helix 191	AV2	N	96	111	Right-handed alpha
Helix 192	AV3	Q	23	33	Right-handed alpha
Helix 193	AV4	Q	45	49	Right-handed 310
Helix 194	AV5	T	34	38	Right-handed 310
Helix 195	AV6	T	39	47	Right-handed alpha
Helix 196	AV7	T	66	83	Right-handed alpha
Helix 197	AV8	T	101	109	Right-handed alpha
Helix 198	AV9	V	81	88	Right-handed alpha
Helix 199	AW1	U	9	26	Right-handed alpha
Helix 200	AW2	U	31	47	Right-handed alpha
Helix 201	AW3	U	53	78	Right-handed alpha
Helix 202	AW4	U	82	105	Right-handed alpha
Helix 203	AW5	U	105	112	Right-handed alpha
Helix 204	AW6	U	138	151	Right-handed alpha
Helix 205	AW7	U	155	172	Right-handed alpha
Helix 206	AW8	U	177	191	Right-handed alpha
Helix 207	AW9	U	202	207	Right-handed alpha
Helix 208	AX1	U	207	229	Right-handed alpha
Helix 209	AX2	U	231	254	Right-handed alpha
Helix 210	AX3	U	255	257	Right-handed 310
Helix 211	AX4	U	258	269	Right-handed alpha
Helix 212	AX5	U	274	283	Right-handed alpha
Helix 213	AX6	U	284	289	Right-handed 310
Helix 214	AX7	U	290	304	Right-handed alpha
Helix 215	AX8	U	307	328	Right-handed alpha
Helix 216	AX9	U	334	357	Right-handed alpha
Helix 217	AY1	U	361	377	Right-handed alpha
Helix 218	AY2	U	386	400	Right-handed alpha
Helix 219	AY3	U	407	424	Right-handed alpha
Helix 220	AY4	U	427	445	Right-handed alpha
Helix 221	AY5	U	450	466	Right-handed alpha
Helix 222	AY6	U	466	496	Right-handed alpha
Helix 223	AY7	U	530	548	Right-handed alpha
Helix 224	AY8	U	557	559	Right-handed 310
Helix 225	AY9	U	579	591	Right-handed alpha
Helix 226	AZ1	U	595	604	Right-handed alpha
Helix 227	AZ2	U	606	620	Right-handed alpha

There are 21 sheets in PDB entry 8JAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	3	8	anti-parallel
Strand 3	C	73	78	parallel
Strand 4	C	43	46	anti-parallel
Strand 5	C	49	50	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	32	first strand
Strand 2	D	18	22	anti-parallel
Strand 3	D	58	61	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	3	9	anti-parallel
Strand 3	G	16	18	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	3	9	anti-parallel
Strand 3	G	73	75	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	80	81	first strand
Strand 2	G	84	85	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	506	513	first strand
Strand 2	R	26	35	parallel
Strand 3	I	551	552	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	506	513	first strand
Strand 2	R	26	35	parallel
Strand 3	I	561	562	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	574	576	first strand
Strand 2	I	650	652	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	593	595	first strand
Strand 2	I	637	640	anti-parallel
Strand 3	I	623	625	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	70	71	first strand
Strand 2	R	79	80	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	16	18	first strand
Strand 2	M	3	8	anti-parallel
Strand 3	M	73	76	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	45	46	first strand
Strand 2	M	49	50	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	18	19	first strand
Strand 2	N	31	32	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	12	13	first strand
Strand 2	Q	3	9	anti-parallel
Strand 3	Q	16	18	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	12	13	first strand
Strand 2	Q	3	9	anti-parallel
Strand 3	Q	73	75	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	42	43	first strand
Strand 2	Q	78	81	anti-parallel
Strand 3	Q	84	85	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	31	32	first strand
Strand 2	T	18	22	anti-parallel
Strand 3	T	58	61	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	508	513	first strand
Strand 2	V	28	35	parallel
Strand 3	U	551	555	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	70	71	first strand
Strand 2	V	79	80	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	561	566	first strand
Strand 2	U	573	578	anti-parallel
Strand 3	U	650	652	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	593	594	first strand
Strand 2	U	638	640	anti-parallel
Strand 3	U	623	624	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JAV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JAV