Analysis of interatomic Contacts of Structural Units in PDB entry:
8JAY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JAY entry

There are 16 chains in PDB entry 8JAY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	ILE 507
A	MET 1	ILE 507
D	MET 1	VAL 422
B	MET 1	VAL 422
I	MET 1	ILE 507
J	MET 1	VAL 422
M	MET 1	ILE 507
N	MET 1	VAL 422
E	U 1	U 21
F	A 3	A 23
G	U 1	U 21
H	C 4	A 23
K	U 1	U 21
L	A 3	A 23
O	U 1	U 21
P	C 4	A 23

There are 98 helices in PDB entry 8JAY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	15	17	Right-handed 310
Helix 2	AA2	C	22	30	Right-handed alpha
Helix 3	AA3	C	46	60	Right-handed alpha
Helix 4	AA4	C	77	82	Right-handed alpha
Helix 5	AA5	C	109	132	Right-handed alpha
Helix 6	AA6	C	205	215	Right-handed alpha
Helix 7	AA7	C	216	218	Right-handed 310
Helix 8	AA8	C	226	230	Right-handed alpha
Helix 9	AA9	C	248	265	Right-handed alpha
Helix 10	AB1	C	331	351	Right-handed alpha
Helix 11	AB2	C	366	376	Right-handed alpha
Helix 12	AB3	C	451	462	Right-handed alpha
Helix 13	AB4	C	477	491	Right-handed alpha
Helix 14	AB5	C	502	507	Right-handed alpha
Helix 15	AB6	A	15	17	Right-handed 310
Helix 16	AB7	A	22	30	Right-handed alpha
Helix 17	AB8	A	46	60	Right-handed alpha
Helix 18	AB9	A	109	132	Right-handed alpha
Helix 19	AC1	A	205	215	Right-handed alpha
Helix 20	AC2	A	216	218	Right-handed 310
Helix 21	AC3	A	225	230	Right-handed alpha
Helix 22	AC4	A	248	265	Right-handed alpha
Helix 23	AC5	A	331	351	Right-handed alpha
Helix 24	AC6	A	367	377	Right-handed alpha
Helix 25	AC7	A	451	462	Right-handed alpha
Helix 26	AC8	A	477	491	Right-handed alpha
Helix 27	AC9	D	15	28	Right-handed alpha
Helix 28	AD1	D	46	56	Right-handed alpha
Helix 29	AD2	D	71	89	Right-handed alpha
Helix 30	AD3	D	109	113	Right-handed 310
Helix 31	AD4	D	123	138	Right-handed alpha
Helix 32	AD5	D	146	158	Right-handed alpha
Helix 33	AD6	D	243	249	Right-handed alpha
Helix 34	AD7	D	257	279	Right-handed alpha
Helix 35	AD8	D	300	304	Right-handed 310
Helix 36	AD9	D	353	366	Right-handed alpha
Helix 37	AE1	D	369	385	Right-handed alpha
Helix 38	AE2	B	15	29	Right-handed alpha
Helix 39	AE3	B	46	54	Right-handed alpha
Helix 40	AE4	B	71	89	Right-handed alpha
Helix 41	AE5	B	125	138	Right-handed alpha
Helix 42	AE6	B	219	224	Right-handed 310
Helix 43	AE7	B	243	249	Right-handed alpha
Helix 44	AE8	B	258	279	Right-handed alpha
Helix 45	AE9	B	300	304	Right-handed 310
Helix 46	AF1	B	353	365	Right-handed alpha
Helix 47	AF2	B	369	385	Right-handed alpha
Helix 48	AF3	I	15	17	Right-handed 310
Helix 49	AF4	I	22	30	Right-handed alpha
Helix 50	AF5	I	46	61	Right-handed alpha
Helix 51	AF6	I	77	82	Right-handed alpha
Helix 52	AF7	I	104	108	Right-handed 310
Helix 53	AF8	I	109	132	Right-handed alpha
Helix 54	AF9	I	206	215	Right-handed alpha
Helix 55	AG1	I	216	218	Right-handed 310
Helix 56	AG2	I	225	230	Right-handed alpha
Helix 57	AG3	I	248	264	Right-handed alpha
Helix 58	AG4	I	331	351	Right-handed alpha
Helix 59	AG5	I	366	377	Right-handed alpha
Helix 60	AG6	I	451	461	Right-handed alpha
Helix 61	AG7	I	477	491	Right-handed alpha
Helix 62	AG8	J	15	29	Right-handed alpha
Helix 63	AG9	J	44	56	Right-handed alpha
Helix 64	AH1	J	65	70	Right-handed 310
Helix 65	AH2	J	71	89	Right-handed alpha
Helix 66	AH3	J	124	139	Right-handed alpha
Helix 67	AH4	J	152	157	Right-handed alpha
Helix 68	AH5	J	199	203	Right-handed 310
Helix 69	AH6	J	242	249	Right-handed alpha
Helix 70	AH7	J	258	278	Right-handed alpha
Helix 71	AH8	J	279	281	Right-handed 310
Helix 72	AH9	J	300	302	Right-handed 310
Helix 73	AI1	J	353	366	Right-handed alpha
Helix 74	AI2	J	369	384	Right-handed alpha
Helix 75	AI3	M	15	17	Right-handed 310
Helix 76	AI4	M	22	30	Right-handed alpha
Helix 77	AI5	M	46	61	Right-handed alpha
Helix 78	AI6	M	77	83	Right-handed alpha
Helix 79	AI7	M	109	132	Right-handed alpha
Helix 80	AI8	M	206	215	Right-handed alpha
Helix 81	AI9	M	248	265	Right-handed alpha
Helix 82	AJ1	M	331	351	Right-handed alpha
Helix 83	AJ2	M	366	375	Right-handed alpha
Helix 84	AJ3	M	451	462	Right-handed alpha
Helix 85	AJ4	M	478	491	Right-handed alpha
Helix 86	AJ5	N	17	28	Right-handed alpha
Helix 87	AJ6	N	46	56	Right-handed alpha
Helix 88	AJ7	N	67	70	Right-handed 310
Helix 89	AJ8	N	71	89	Right-handed alpha
Helix 90	AJ9	N	109	114	Right-handed alpha
Helix 91	AK1	N	126	138	Right-handed alpha
Helix 92	AK2	N	146	158	Right-handed alpha
Helix 93	AK3	N	219	224	Right-handed 310
Helix 94	AK4	N	243	248	Right-handed alpha
Helix 95	AK5	N	257	279	Right-handed alpha
Helix 96	AK6	N	300	302	Right-handed 310
Helix 97	AK7	N	354	366	Right-handed alpha
Helix 98	AK8	N	369	385	Right-handed alpha

There are 43 sheets in PDB entry 8JAY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	398	first strand
Strand 2	D	169	172	anti-parallel
Strand 3	D	409	412	anti-parallel
Strand 4	C	3	6	parallel
Strand 5	C	409	410	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	19	20	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	95	first strand
Strand 2	C	42	45	parallel
Strand 3	C	139	143	parallel
Strand 4	C	222	225	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	284	first strand
Strand 2	C	299	300	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	361	first strand
Strand 2	C	383	388	parallel
Strand 3	C	441	445	anti-parallel
Strand 4	C	418	420	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	409	412	anti-parallel
Strand 3	A	418	420	anti-parallel
Strand 4	A	441	447	anti-parallel
Strand 5	A	383	388	anti-parallel
Strand 6	A	356	360	parallel
Strand 7	A	278	282	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	19	20	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	95	first strand
Strand 2	A	41	45	parallel
Strand 3	A	138	141	parallel
Strand 4	A	222	223	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	398	first strand
Strand 2	B	169	172	anti-parallel
Strand 3	B	409	412	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	57	60	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	64	first strand
Strand 2	D	97	98	parallel
Strand 3	D	118	119	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	208	first strand
Strand 2	D	215	216	anti-parallel
Strand 3	D	184	187	anti-parallel
Strand 4	D	239	242	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	285	first strand
Strand 2	D	292	294	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	312	314	first strand
Strand 2	D	317	328	anti-parallel
Strand 3	D	334	344	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	390	393	first strand
Strand 2	D	401	404	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	4	8	parallel
Strand 3	B	57	64	parallel
Strand 4	B	97	98	parallel
Strand 5	B	118	119	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	177	first strand
Strand 2	B	334	344	anti-parallel
Strand 3	B	318	328	anti-parallel
Strand 4	B	312	313	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	210	first strand
Strand 2	B	213	216	anti-parallel
Strand 3	B	184	188	anti-parallel
Strand 4	B	239	242	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	292	294	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	393	first strand
Strand 2	B	401	404	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	6	first strand
Strand 2	I	409	412	anti-parallel
Strand 3	I	418	420	anti-parallel
Strand 4	I	441	445	anti-parallel
Strand 5	I	385	389	anti-parallel
Strand 6	I	359	361	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	14	first strand
Strand 2	I	18	20	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	93	95	first strand
Strand 2	I	43	45	parallel
Strand 3	I	140	141	parallel
Strand 4	I	222	223	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	397	398	first strand
Strand 2	J	169	172	anti-parallel
Strand 3	J	409	412	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	8	first strand
Strand 2	J	57	64	parallel
Strand 3	J	96	98	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	175	177	first strand
Strand 2	J	334	343	anti-parallel
Strand 3	J	318	328	anti-parallel
Strand 4	J	311	313	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	207	210	first strand
Strand 2	J	213	216	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	283	285	first strand
Strand 2	J	292	294	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	304	305	first strand
Strand 2	J	308	309	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	390	391	first strand
Strand 2	J	403	404	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	12	13	first strand
Strand 2	M	19	20	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	91	95	first strand
Strand 2	M	41	45	parallel
Strand 3	M	138	143	parallel
Strand 4	M	222	225	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	278	279	first strand
Strand 2	M	356	357	parallel
Strand 3	M	382	383	parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	360	361	first strand
Strand 2	M	386	389	parallel
Strand 3	M	441	445	anti-parallel
Strand 4	M	418	420	anti-parallel
Strand 5	M	410	412	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	5	7	first strand
Strand 2	N	59	61	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	63	64	first strand
Strand 2	N	97	98	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	164	165	first strand
Strand 2	N	415	416	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	169	172	first strand
Strand 2	N	409	412	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	184	187	first strand
Strand 2	N	239	242	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	283	286	first strand
Strand 2	N	291	294	anti-parallel
Strand 3	N	317	328	anti-parallel
Strand 4	N	311	314	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	283	286	first strand
Strand 2	N	291	294	anti-parallel
Strand 3	N	317	328	anti-parallel
Strand 4	N	334	344	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	304	305	first strand
Strand 2	N	308	309	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	390	394	first strand
Strand 2	N	400	404	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JAY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JAY