Analysis of interatomic Contacts of Structural Units in PDB entry:
8JB1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JB1 entry

There are 2 chains in PDB entry 8JB1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3PRO 472
B
 ASN 4PRO 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8JB1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 30Right-handed alpha
Helix 2
AA2
A
44 54Right-handed alpha
Helix 3
AA3
A
55 57Right-handed 310
Helix 4
AA4
A
64 76Right-handed alpha
Helix 5
AA5
A
87 96Right-handed alpha
Helix 6
AA6
A
101 106Right-handed alpha
Helix 7
AA7
A
131 148Right-handed alpha
Helix 8
AA8
A
164 175Right-handed alpha
Helix 9
AA9
A
214 219Right-handed 310
Helix 10
AB1
A
234 239Right-handed alpha
Helix 11
AB2
A
239 244Right-handed alpha
Helix 12
AB3
A
268 272Right-handed 310
Helix 13
AB4
A
283 300Right-handed alpha
Helix 14
AB5
A
343 352Right-handed alpha
Helix 15
AB6
A
353 356Right-handed 310
Helix 16
AB7
A
385 400Right-handed alpha
Helix 17
AB8
A
415 420Right-handed 310
Helix 18
AB9
A
431 433Right-handed 310
Helix 19
AC1
A
449 465Right-handed alpha
Helix 20
AC2
B
7 28Right-handed alpha
Helix 21
AC3
B
44 54Right-handed alpha
Helix 22
AC4
B
55 58Right-handed 310
Helix 23
AC5
B
64 74Right-handed alpha
Helix 24
AC6
B
88 96Right-handed alpha
Helix 25
AC7
B
101 110Right-handed alpha
Helix 26
AC8
B
131 146Right-handed alpha
Helix 27
AC9
B
164 175Right-handed alpha
Helix 28
AD1
B
214 219Right-handed 310
Helix 29
AD2
B
234 239Right-handed alpha
Helix 30
AD3
B
240 244Right-handed 310
Helix 31
AD4
B
268 272Right-handed 310
Helix 32
AD5
B
283 300Right-handed alpha
Helix 33
AD6
B
343 352Right-handed alpha
Helix 34
AD7
B
353 356Right-handed 310
Helix 35
AD8
B
385 400Right-handed alpha
Helix 36
AD9
B
415 420Right-handed 310
Helix 37
AE1
B
449 465Right-handed alpha
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There are 7 sheets in PDB entry 8JB1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
83 86parallel
Strand 3
A
470 471parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
194 197anti-parallel
Strand 3
A
200 206anti-parallel
Strand 4
A
151 158parallel
Strand 5
A
123 128parallel
Strand 6
A
223 227parallel
Strand 7
A
247 252parallel
Strand 8
A
278 280parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 340first strand
Strand 2
A
359 365anti-parallel
Strand 3
A
302 311parallel
Strand 4
A
372 380anti-parallel
Strand 5
A
439 446anti-parallel
Strand 6
A
426 429anti-parallel
Strand 7
A
406 409parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 340first strand
Strand 2
A
359 365anti-parallel
Strand 3
A
302 311parallel
Strand 4
A
372 380anti-parallel
Strand 5
A
439 446anti-parallel
Strand 6
A
434 436anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 39first strand
Strand 2
B
31 35anti-parallel
Strand 3
B
83 86parallel
Strand 4
B
470 471parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 189first strand
Strand 2
B
194 197anti-parallel
Strand 3
B
200 206anti-parallel
Strand 4
B
151 158parallel
Strand 5
B
123 128parallel
Strand 6
B
223 227parallel
Strand 7
B
247 252parallel
Strand 8
B
278 280parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 340first strand
Strand 2
B
359 366anti-parallel
Strand 3
B
302 312parallel
Strand 4
B
372 380anti-parallel
Strand 5
B
439 446anti-parallel
Strand 6
B
427 436anti-parallel
Strand 7
B
407 409parallel
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