Analysis of interatomic Contacts of Structural Units in PDB entry:
8JB3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JB3 entry

There is 1 chain in PDB entry 8JB3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 15ASP 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 8JB3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 35Right-handed alpha
Helix 2
AA2
A
36 39Right-handed 310
Helix 3
AA3
A
44 77Right-handed alpha
Helix 4
AA4
A
98 104Right-handed alpha
Helix 5
AA5
A
115 128Right-handed alpha
Helix 6
AA6
A
129 132Right-handed 310
Helix 7
AA7
A
138 160Right-handed alpha
Helix 8
AA8
A
190 200Right-handed alpha
Helix 9
AA9
A
214 222Right-handed alpha
Helix 10
AB1
A
222 232Right-handed alpha
Helix 11
AB2
A
236 241Right-handed alpha
Helix 12
AB3
A
271 275Right-handed 310
Helix 13
AB4
A
277 282Right-handed alpha
Helix 14
AB5
A
284 306Right-handed alpha
Helix 15
AB6
A
342 359Right-handed alpha
Helix 16
AB7
A
360 365Right-handed alpha
Helix 17
AB8
A
383 395Right-handed alpha
Helix 18
AB9
A
402 404Right-handed 310
Helix 19
AC1
A
421 427Right-handed 310
Helix 20
AC2
A
435 448Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8JB3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 269first strand
Strand 2
A
252 259anti-parallel
Strand 3
A
243 247anti-parallel
Strand 4
A
203 207parallel
Strand 5
A
168 171parallel
Strand 6
A
406 410parallel
Strand 7
A
429 432parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 316first strand
Strand 2
A
320 324anti-parallel
Strand 3
A
377 381anti-parallel
Strand 4
A
368 372anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
336 339anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il