Analysis of interatomic Contacts of Structural Units in PDB entry:
8JB5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JB5 entry

There is 1 chain in PDB entry 8JB5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 2364

There are 60 helices in PDB entry 8JB5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	13	Right-handed alpha
Helix 2	AA2	A	21	36	Right-handed alpha
Helix 3	AA3	A	41	63	Right-handed alpha
Helix 4	AA4	A	68	87	Right-handed alpha
Helix 5	AA5	A	108	122	Right-handed alpha
Helix 6	AA6	A	137	156	Right-handed alpha
Helix 7	AA7	A	167	197	Right-handed alpha
Helix 8	AA8	A	201	214	Right-handed alpha
Helix 9	AA9	A	217	234	Right-handed alpha
Helix 10	AB1	A	248	261	Right-handed alpha
Helix 11	AB2	A	264	280	Right-handed alpha
Helix 12	AB3	A	308	324	Right-handed alpha
Helix 13	AB4	A	339	353	Right-handed alpha
Helix 14	AB5	A	355	358	Right-handed 310
Helix 15	AB6	A	393	420	Right-handed alpha
Helix 16	AB7	A	423	438	Right-handed alpha
Helix 17	AB8	A	443	450	Right-handed alpha
Helix 18	AB9	A	452	456	Right-handed 310
Helix 19	AC1	A	464	469	Right-handed alpha
Helix 20	AC2	A	470	484	Right-handed alpha
Helix 21	AC3	A	494	499	Right-handed alpha
Helix 22	AC4	A	500	502	Right-handed 310
Helix 23	AC5	A	504	506	Right-handed 310
Helix 24	AC6	A	512	519	Right-handed alpha
Helix 25	AC7	A	523	539	Right-handed alpha
Helix 26	AC8	A	558	568	Right-handed alpha
Helix 27	AC9	A	587	601	Right-handed alpha
Helix 28	AD1	A	637	642	Right-handed alpha
Helix 29	AD2	A	667	683	Right-handed alpha
Helix 30	AD3	A	706	709	Right-handed 310
Helix 31	AD4	A	710	727	Right-handed alpha
Helix 32	AD5	A	731	733	Right-handed 310
Helix 33	AD6	A	764	775	Right-handed alpha
Helix 34	AD7	A	793	809	Right-handed alpha
Helix 35	AD8	A	814	839	Right-handed alpha
Helix 36	AD9	A	850	876	Right-handed alpha
Helix 37	AE1	A	916	936	Right-handed alpha
Helix 38	AE2	A	954	971	Right-handed alpha
Helix 39	AE3	A	978	995	Right-handed alpha
Helix 40	AE4	A	997	1001	Right-handed 310
Helix 41	AE5	A	1003	1017	Right-handed alpha
Helix 42	AE6	A	1042	1051	Right-handed alpha
Helix 43	AE7	A	1053	1065	Right-handed alpha
Helix 44	AE8	A	1072	1087	Right-handed alpha
Helix 45	AE9	A	1116	1133	Right-handed alpha
Helix 46	AF1	A	1203	1206	Right-handed 310
Helix 47	AF2	A	1245	1258	Right-handed alpha
Helix 48	AF3	A	1305	1310	Right-handed alpha
Helix 49	AF4	A	1348	1352	Right-handed alpha
Helix 50	AF5	A	1370	1373	Right-handed 310
Helix 51	AF6	A	1432	1439	Right-handed alpha
Helix 52	AF7	A	1439	1450	Right-handed alpha
Helix 53	AF8	A	1558	1572	Right-handed alpha
Helix 54	AF9	A	1580	1589	Right-handed alpha
Helix 55	AG1	A	1651	1653	Right-handed 310
Helix 56	AG2	A	1680	1683	Right-handed 310
Helix 57	AG3	A	1685	1689	Right-handed 310
Helix 58	AG4	A	1774	1779	Right-handed alpha
Helix 59	AG5	A	1792	1800	Right-handed alpha
Helix 60	AG6	A	1868	1872	Right-handed 310

There are 44 sheets in PDB entry 8JB5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	367	368	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	126	131	parallel
Strand 3	A	97	101	parallel
Strand 4	A	282	285	parallel
Strand 5	A	381	389	anti-parallel
Strand 6	A	374	378	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	361	first strand
Strand 2	A	290	293	anti-parallel
Strand 3	A	508	509	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	609	first strand
Strand 2	A	578	583	parallel
Strand 3	A	645	651	parallel
Strand 4	A	690	696	parallel
Strand 5	A	735	740	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	617	622	first strand
Strand 2	A	627	632	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	744	746	first strand
Strand 2	A	752	755	anti-parallel
Strand 3	A	761	762	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	777	781	first strand
Strand 2	A	786	790	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	882	884	first strand
Strand 2	A	895	902	anti-parallel
Strand 3	A	890	892	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	882	884	first strand
Strand 2	A	895	902	anti-parallel
Strand 3	A	908	913	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	938	940	first strand
Strand 2	A	943	945	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1035	1036	first strand
Strand 2	A	1039	1040	anti-parallel

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There are 16 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1067	1068	first strand
Strand 2	A	1514	1521	anti-parallel
Strand 3	A	1524	1533	anti-parallel
Strand 4	A	1536	1544	anti-parallel
Strand 5	A	1549	1557	anti-parallel
Strand 6	A	1604	1617	parallel
Strand 7	A	1620	1626	anti-parallel
Strand 8	A	1632	1641	anti-parallel
Strand 9	A	1644	1649	anti-parallel
Strand 10	A	1656	1660	anti-parallel
Strand 11	A	1691	1694	parallel
Strand 12	A	1717	1720	parallel
Strand 13	A	1764	1768	parallel
Strand 14	A	1749	1754	anti-parallel
Strand 15	A	1741	1746	anti-parallel
Strand 16	A	1801	1802	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1105	1107	first strand
Strand 2	A	1110	1112	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1136	1139	first strand
Strand 2	A	1143	1146	anti-parallel
Strand 3	A	1219	1221	parallel
Strand 4	A	1296	1299	parallel
Strand 5	A	1322	1325	parallel
Strand 6	A	1343	1347	parallel
Strand 7	A	1401	1407	parallel
Strand 8	A	1413	1419	anti-parallel
Strand 9	A	1425	1430	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1161	1164	first strand
Strand 2	A	1152	1156	anti-parallel
Strand 3	A	1287	1290	parallel
Strand 4	A	1314	1317	parallel
Strand 5	A	1334	1338	parallel
Strand 6	A	1388	1393	parallel
Strand 7	A	1381	1384	anti-parallel
Strand 8	A	1375	1377	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1168	1169	first strand
Strand 2	A	1200	1201	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1171	1173	first strand
Strand 2	A	1192	1194	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1179	1181	first strand
Strand 2	A	1184	1186	anti-parallel
Strand 3	A	1265	1267	parallel
Strand 4	A	1272	1283	anti-parallel
Strand 5	A	1227	1236	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1353	1358	first strand
Strand 2	A	1361	1367	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1459	1466	first strand
Strand 2	A	1469	1476	anti-parallel
Strand 3	A	1481	1487	anti-parallel
Strand 4	A	1492	1498	anti-parallel
Strand 5	A	1506	1510	anti-parallel
Strand 6	A	1596	1597	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1674	1678	first strand
Strand 2	A	1702	1706	parallel
Strand 3	A	1730	1734	parallel
Strand 4	A	1781	1784	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1815	1819	first strand
Strand 2	A	1822	1826	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1835	1839	first strand
Strand 2	A	1842	1847	anti-parallel
Strand 3	A	1852	1853	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1856	1860	first strand
Strand 2	A	1863	1867	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1878	1882	first strand
Strand 2	A	1885	1889	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1898	1902	first strand
Strand 2	A	1905	1910	anti-parallel
Strand 3	A	1922	1923	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1928	1932	first strand
Strand 2	A	1935	1939	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1969	1973	first strand
Strand 2	A	1976	1980	anti-parallel
Strand 3	A	1986	1987	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1991	1992	first strand
Strand 2	A	1997	1998	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2009	2013	first strand
Strand 2	A	2016	2020	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2029	2033	first strand
Strand 2	A	2036	2040	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2059	2063	first strand
Strand 2	A	2066	2070	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2079	2082	first strand
Strand 2	A	2088	2091	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2101	2105	first strand
Strand 2	A	2108	2112	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2143	2145	first strand
Strand 2	A	2148	2150	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2161	2165	first strand
Strand 2	A	2168	2173	anti-parallel
Strand 3	A	2185	2187	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2191	2194	first strand
Strand 2	A	2199	2202	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2211	2215	first strand
Strand 2	A	2218	2222	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2232	2236	first strand
Strand 2	A	2239	2243	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2252	2256	first strand
Strand 2	A	2259	2263	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2272	2276	first strand
Strand 2	A	2279	2283	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2292	2296	first strand
Strand 2	A	2299	2304	anti-parallel
Strand 3	A	2316	2318	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2322	2326	first strand
Strand 2	A	2329	2333	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2343	2346	first strand
Strand 2	A	2349	2352	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JB5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JB5