Analysis of interatomic Contacts of Structural Units in PDB entry:
8JBB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JBB entry

There are 4 chains in PDB entry 8JBB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3PHE 464
B
 MET 1PHE 464
C
 A 3 A 3
D
 A 3 A 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8JBB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 17Right-handed alpha
Helix 2
AA2
A
20 29Right-handed alpha
Helix 3
AA3
A
29 40Right-handed alpha
Helix 4
AA4
A
60 72Right-handed alpha
Helix 5
AA5
A
84 86Right-handed 310
Helix 6
AA6
A
87 96Right-handed alpha
Helix 7
AA7
A
108 123Right-handed alpha
Helix 8
AA8
A
136 151Right-handed alpha
Helix 9
AA9
A
186 191Right-handed alpha
Helix 10
AB1
A
193 205Right-handed alpha
Helix 11
AB2
A
207 222Right-handed alpha
Helix 12
AB3
A
225 242Right-handed alpha
Helix 13
AB4
A
244 260Right-handed alpha
Helix 14
AB5
A
261 265Right-handed 310
Helix 15
AB6
A
267 271Right-handed 310
Helix 16
AB7
A
272 293Right-handed alpha
Helix 17
AB8
A
297 316Right-handed alpha
Helix 18
AB9
A
319 342Right-handed alpha
Helix 19
AC1
A
352 368Right-handed alpha
Helix 20
AC2
A
370 374Right-handed 310
Helix 21
AC3
A
381 392Right-handed alpha
Helix 22
AC4
A
394 399Right-handed alpha
Helix 23
AC5
A
401 414Right-handed alpha
Helix 24
AC6
A
428 448Right-handed alpha
Helix 25
AC7
B
2 17Right-handed alpha
Helix 26
AC8
B
20 29Right-handed alpha
Helix 27
AC9
B
29 40Right-handed alpha
Helix 28
AD1
B
60 72Right-handed alpha
Helix 29
AD2
B
84 86Right-handed 310
Helix 30
AD3
B
87 96Right-handed alpha
Helix 31
AD4
B
108 123Right-handed alpha
Helix 32
AD5
B
136 151Right-handed alpha
Helix 33
AD6
B
186 191Right-handed alpha
Helix 34
AD7
B
193 205Right-handed alpha
Helix 35
AD8
B
207 223Right-handed alpha
Helix 36
AD9
B
225 242Right-handed alpha
Helix 37
AE1
B
244 260Right-handed alpha
Helix 38
AE2
B
261 265Right-handed 310
Helix 39
AE3
B
267 271Right-handed 310
Helix 40
AE4
B
272 293Right-handed alpha
Helix 41
AE5
B
297 316Right-handed alpha
Helix 42
AE6
B
319 341Right-handed alpha
Helix 43
AE7
B
352 368Right-handed alpha
Helix 44
AE8
B
370 374Right-handed 310
Helix 45
AE9
B
381 392Right-handed alpha
Helix 46
AF1
B
394 399Right-handed alpha
Helix 47
AF2
B
401 414Right-handed alpha
Helix 48
AF3
B
428 448Right-handed alpha
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There are 3 sheets in PDB entry 8JBB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 103first strand
Strand 2
A
75 80parallel
Strand 3
A
52 57parallel
Strand 4
A
128 131parallel
Strand 5
A
157 163parallel
Strand 6
A
180 184anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
173 174anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 103first strand
Strand 2
B
75 80parallel
Strand 3
B
52 57parallel
Strand 4
B
128 131parallel
Strand 5
B
157 163parallel
Strand 6
B
180 184anti-parallel
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