Analysis of interatomic Contacts of Structural Units in PDB entry:
8JBC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JBC entry

There are 2 chains in PDB entry 8JBC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -3PHE 464
B
 MET 1PHE 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8JBC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 17Right-handed alpha
Helix 2
AA2
A
20 28Right-handed alpha
Helix 3
AA3
A
29 40Right-handed alpha
Helix 4
AA4
A
60 72Right-handed alpha
Helix 5
AA5
A
82 86Right-handed 310
Helix 6
AA6
A
87 96Right-handed alpha
Helix 7
AA7
A
108 123Right-handed alpha
Helix 8
AA8
A
136 152Right-handed alpha
Helix 9
AA9
A
186 191Right-handed alpha
Helix 10
AB1
A
194 205Right-handed alpha
Helix 11
AB2
A
207 223Right-handed alpha
Helix 12
AB3
A
225 242Right-handed alpha
Helix 13
AB4
A
244 260Right-handed alpha
Helix 14
AB5
A
267 271Right-handed 310
Helix 15
AB6
A
272 293Right-handed alpha
Helix 16
AB7
A
297 316Right-handed alpha
Helix 17
AB8
A
319 343Right-handed alpha
Helix 18
AB9
A
352 368Right-handed alpha
Helix 19
AC1
A
381 392Right-handed alpha
Helix 20
AC2
A
394 399Right-handed alpha
Helix 21
AC3
A
401 407Right-handed alpha
Helix 22
AC4
A
408 409Right-handed 310
Helix 23
AC5
A
410 414Right-handed 310
Helix 24
AC6
A
428 449Right-handed alpha
Helix 25
AC7
B
2 16Right-handed alpha
Helix 26
AC8
B
21 29Right-handed alpha
Helix 27
AC9
B
29 38Right-handed alpha
Helix 28
AD1
B
60 72Right-handed alpha
Helix 29
AD2
B
82 86Right-handed 310
Helix 30
AD3
B
87 96Right-handed alpha
Helix 31
AD4
B
108 123Right-handed alpha
Helix 32
AD5
B
136 152Right-handed alpha
Helix 33
AD6
B
186 191Right-handed alpha
Helix 34
AD7
B
194 205Right-handed alpha
Helix 35
AD8
B
207 223Right-handed alpha
Helix 36
AD9
B
225 242Right-handed alpha
Helix 37
AE1
B
244 261Right-handed alpha
Helix 38
AE2
B
262 265Right-handed 310
Helix 39
AE3
B
267 271Right-handed 310
Helix 40
AE4
B
272 293Right-handed alpha
Helix 41
AE5
B
297 316Right-handed alpha
Helix 42
AE6
B
319 342Right-handed alpha
Helix 43
AE7
B
352 368Right-handed alpha
Helix 44
AE8
B
381 392Right-handed alpha
Helix 45
AE9
B
394 399Right-handed alpha
Helix 46
AF1
B
401 414Right-handed alpha
Helix 47
AF2
B
428 449Right-handed alpha
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There are 2 sheets in PDB entry 8JBC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
180 183parallel
Strand 3
A
157 163anti-parallel
Strand 4
A
128 131parallel
Strand 5
A
52 57parallel
Strand 6
A
75 80parallel
Strand 7
A
99 103parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
180 183parallel
Strand 3
B
157 163anti-parallel
Strand 4
B
128 131parallel
Strand 5
B
52 57parallel
Strand 6
B
75 80parallel
Strand 7
B
100 103parallel
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