Analysis of interatomic Contacts of Structural Units in PDB entry:
8JBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JBD entry

There are 2 chains in PDB entry 8JBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 436
B
 MET 1LEU 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8JBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
7 14Right-handed alpha
Helix 3
AA3
A
15 37Right-handed alpha
Helix 4
AA4
A
43 55Right-handed alpha
Helix 5
AA5
A
58 70Right-handed alpha
Helix 6
AA6
A
76 88Right-handed alpha
Helix 7
AA7
A
89 96Right-handed alpha
Helix 8
AA8
A
101 140Right-handed alpha
Helix 9
AA9
A
158 184Right-handed alpha
Helix 10
AB1
A
199 211Right-handed alpha
Helix 11
AB2
A
224 250Right-handed alpha
Helix 12
AB3
A
282 303Right-handed alpha
Helix 13
AB4
A
315 342Right-handed alpha
Helix 14
AB5
A
426 434Right-handed alpha
Helix 15
AB6
B
2 6Right-handed 310
Helix 16
AB7
B
7 14Right-handed alpha
Helix 17
AB8
B
15 37Right-handed alpha
Helix 18
AB9
B
43 55Right-handed alpha
Helix 19
AC1
B
58 69Right-handed alpha
Helix 20
AC2
B
77 87Right-handed alpha
Helix 21
AC3
B
91 96Right-handed 310
Helix 22
AC4
B
101 139Right-handed alpha
Helix 23
AC5
B
159 184Right-handed alpha
Helix 24
AC6
B
199 211Right-handed alpha
Helix 25
AC7
B
224 249Right-handed alpha
Helix 26
AC8
B
282 303Right-handed alpha
Helix 27
AC9
B
316 341Right-handed alpha
Helix 28
AD1
B
426 433Right-handed alpha
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There are 3 sheets in PDB entry 8JBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
156 157anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
213 214parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 186first strand
Strand 2
B
213 214parallel
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