Analysis of interatomic Contacts of Structural Units in PDB entry:
8JBE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JBE entry

There are 3 chains in PDB entry 8JBE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 6	ALA 633
B	GLN 6	LYS 485
C	LEU 111	PHE 528

There are 44 helices in PDB entry 8JBE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	45	Right-handed 310
Helix 2	AA2	A	104	108	Right-handed 310
Helix 3	AA3	A	206	208	Right-handed 310
Helix 4	AA4	A	355	363	Right-handed alpha
Helix 5	AA5	A	365	374	Right-handed alpha
Helix 6	AA6	A	380	392	Right-handed alpha
Helix 7	AA7	A	407	427	Right-handed alpha
Helix 8	AA8	A	448	458	Right-handed alpha
Helix 9	AA9	A	464	479	Right-handed alpha
Helix 10	AB1	A	484	498	Right-handed alpha
Helix 11	AB2	A	501	510	Right-handed alpha
Helix 12	AB3	A	516	527	Right-handed alpha
Helix 13	AB4	A	531	544	Right-handed alpha
Helix 14	AB5	A	546	558	Right-handed alpha
Helix 15	AB6	A	559	571	Right-handed alpha
Helix 16	AB7	A	577	589	Right-handed alpha
Helix 17	AB8	A	592	610	Right-handed alpha
Helix 18	AB9	A	620	631	Right-handed alpha
Helix 19	AC1	B	28	31	Right-handed 310
Helix 20	AC2	B	42	61	Right-handed alpha
Helix 21	AC3	B	65	69	Right-handed 310
Helix 22	AC4	B	117	137	Right-handed alpha
Helix 23	AC5	B	149	157	Right-handed alpha
Helix 24	AC6	B	158	160	Right-handed 310
Helix 25	AC7	B	178	184	Right-handed alpha
Helix 26	AC8	B	192	201	Right-handed alpha
Helix 27	AC9	B	204	209	Right-handed alpha
Helix 28	AD1	B	230	245	Right-handed alpha
Helix 29	AD2	B	332	361	Right-handed alpha
Helix 30	AD3	B	407	417	Right-handed alpha
Helix 31	AD4	B	461	477	Right-handed alpha
Helix 32	AD5	C	139	155	Right-handed alpha
Helix 33	AD6	C	189	208	Right-handed alpha
Helix 34	AD7	C	209	219	Right-handed alpha
Helix 35	AD8	C	232	242	Right-handed alpha
Helix 36	AD9	C	251	259	Right-handed alpha
Helix 37	AE1	C	267	282	Right-handed alpha
Helix 38	AE2	C	311	325	Right-handed alpha
Helix 39	AE3	C	373	390	Right-handed alpha
Helix 40	AE4	C	391	402	Right-handed alpha
Helix 41	AE5	C	405	414	Right-handed alpha
Helix 42	AE6	C	443	461	Right-handed alpha
Helix 43	AE7	C	498	516	Right-handed alpha
Helix 44	AE8	C	516	521	Right-handed alpha

There are 13 sheets in PDB entry 8JBE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	353	354	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	A	348	351	anti-parallel
Strand 3	A	340	342	anti-parallel
Strand 4	A	334	336	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	31	first strand
Strand 2	A	36	40	anti-parallel
Strand 3	A	49	51	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	124	first strand
Strand 2	A	127	132	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	142	first strand
Strand 2	A	147	153	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	162	first strand
Strand 2	A	169	174	anti-parallel
Strand 3	A	180	185	anti-parallel
Strand 4	A	190	192	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	215	first strand
Strand 2	A	218	226	anti-parallel
Strand 3	A	233	239	anti-parallel
Strand 4	A	248	254	anti-parallel
Strand 5	A	295	298	parallel
Strand 6	A	290	292	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	266	first strand
Strand 2	A	269	274	anti-parallel
Strand 3	A	279	281	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	37	first strand
Strand 2	B	11	19	anti-parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	77	82	anti-parallel
Strand 5	B	71	74	anti-parallel
Strand 6	C	160	165	anti-parallel
Strand 7	C	168	174	anti-parallel
Strand 8	C	178	184	anti-parallel
Strand 9	C	117	123	anti-parallel
Strand 10	C	130	131	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	187	first strand
Strand 2	B	390	393	parallel
Strand 3	B	380	385	anti-parallel
Strand 4	B	449	455	anti-parallel
Strand 5	B	440	445	anti-parallel
Strand 6	B	429	435	anti-parallel
Strand 7	C	467	472	anti-parallel
Strand 8	C	478	483	anti-parallel
Strand 9	C	488	493	anti-parallel
Strand 10	C	418	423	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	225	first strand
Strand 2	B	212	218	anti-parallel
Strand 3	B	319	325	anti-parallel
Strand 4	B	305	314	anti-parallel
Strand 5	B	296	300	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	262	first strand
Strand 2	C	430	431	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	337	first strand
Strand 2	C	348	354	anti-parallel
Strand 3	C	362	367	anti-parallel
Strand 4	C	288	294	anti-parallel
Strand 5	C	299	304	anti-parallel
Strand 6	C	526	527	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JBE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JBE