Analysis of interatomic Contacts of Structural Units in PDB entry:
8JBI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JBI entry

There are 4 chains in PDB entry 8JBI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 PRO 212GLU 371
A
 GLN 211GLU 371
B
 GLN 211GLU 371
C
 GLN 211GLU 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8JBI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
213 221Right-handed alpha
Helix 2
AA2
D
221 226Right-handed alpha
Helix 3
AA3
D
229 235Right-handed 310
Helix 4
AA4
D
278 279Right-handed 310
Helix 5
AA5
D
281 281Right-handed 310
Helix 6
AA6
D
282 289Right-handed alpha
Helix 7
AA7
D
324 338Right-handed alpha
Helix 8
AA8
A
213 220Right-handed alpha
Helix 9
AA9
A
221 226Right-handed alpha
Helix 10
AB1
A
229 235Right-handed 310
Helix 11
AB2
A
277 289Right-handed alpha
Helix 12
AB3
A
324 337Right-handed alpha
Helix 13
AB4
B
213 220Right-handed alpha
Helix 14
AB5
B
221 226Right-handed alpha
Helix 15
AB6
B
229 234Right-handed alpha
Helix 16
AB7
B
277 289Right-handed alpha
Helix 17
AB8
B
324 338Right-handed alpha
Helix 18
AB9
C
213 220Right-handed alpha
Helix 19
AC1
C
221 226Right-handed alpha
Helix 20
AC2
C
229 234Right-handed 310
Helix 21
AC3
C
277 289Right-handed alpha
Helix 22
AC4
C
324 337Right-handed alpha
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There are 8 sheets in PDB entry 8JBI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
237 241first strand
Strand 2
D
244 248anti-parallel
Strand 3
D
253 257anti-parallel
Strand 4
D
305 313anti-parallel
Strand 5
D
295 302anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
318 319first strand
Strand 2
A
347 354anti-parallel
Strand 3
A
357 370anti-parallel
Strand 4
D
340 344anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 319first strand
Strand 2
D
348 354anti-parallel
Strand 3
D
357 369anti-parallel
Strand 4
A
341 344anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 240first strand
Strand 2
A
245 248anti-parallel
Strand 3
A
253 257anti-parallel
Strand 4
A
305 313anti-parallel
Strand 5
A
295 302anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 228first strand
Strand 2
B
295 302parallel
Strand 3
B
305 313anti-parallel
Strand 4
B
253 257anti-parallel
Strand 5
B
245 248anti-parallel
Strand 6
B
237 239anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 319first strand
Strand 2
C
347 354anti-parallel
Strand 3
C
357 370anti-parallel
Strand 4
B
340 343anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
318 319first strand
Strand 2
B
349 354anti-parallel
Strand 3
B
357 369anti-parallel
Strand 4
C
341 344anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
227 228first strand
Strand 2
C
295 302parallel
Strand 3
C
305 313anti-parallel
Strand 4
C
253 257anti-parallel
Strand 5
C
245 248anti-parallel
Strand 6
C
237 240anti-parallel
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