Analysis of interatomic Contacts of Structural Units in PDB entry:
8JBK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JBK entry

There are 2 chains in PDB entry 8JBK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 22	TYR 1016
B	LYS 13	ARG 290

There are115 helices in PDB entry 8JBK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	30	Right-handed alpha
Helix 2	AA2	A	40	49	Right-handed alpha
Helix 3	AA3	A	57	69	Right-handed alpha
Helix 4	AA4	A	82	90	Right-handed alpha
Helix 5	AA5	A	91	114	Right-handed alpha
Helix 6	AA6	A	120	156	Right-handed alpha
Helix 7	AA7	A	176	178	Right-handed 310
Helix 8	AA8	A	208	213	Right-handed alpha
Helix 9	AA9	A	258	268	Right-handed alpha
Helix 10	AB1	A	275	306	Right-handed alpha
Helix 11	AB2	A	309	325	Right-handed alpha
Helix 12	AB3	A	328	347	Right-handed alpha
Helix 13	AB4	A	353	360	Right-handed alpha
Helix 14	AB5	A	361	363	Right-handed 310
Helix 15	AB6	A	408	421	Right-handed alpha
Helix 16	AB7	A	443	457	Right-handed alpha
Helix 17	AB8	A	459	467	Right-handed alpha
Helix 18	AB9	A	503	510	Right-handed alpha
Helix 19	AC1	A	524	541	Right-handed alpha
Helix 20	AC2	A	591	602	Right-handed alpha
Helix 21	AC3	A	613	625	Right-handed alpha
Helix 22	AC4	A	633	642	Right-handed alpha
Helix 23	AC5	A	644	648	Right-handed 310
Helix 24	AC6	A	649	653	Right-handed 310
Helix 25	AC7	A	660	665	Right-handed alpha
Helix 26	AC8	A	667	677	Right-handed alpha
Helix 27	AC9	A	689	701	Right-handed alpha
Helix 28	AD1	A	714	721	Right-handed alpha
Helix 29	AD2	A	732	739	Right-handed alpha
Helix 30	AD3	A	747	773	Right-handed alpha
Helix 31	AD4	A	775	790	Right-handed alpha
Helix 32	AD5	A	796	808	Right-handed alpha
Helix 33	AD6	A	809	815	Right-handed alpha
Helix 34	AD7	A	816	818	Right-handed 310
Helix 35	AD8	A	839	849	Right-handed alpha
Helix 36	AD9	A	849	870	Right-handed alpha
Helix 37	AE1	A	873	878	Right-handed 310
Helix 38	AE2	A	879	884	Right-handed alpha
Helix 39	AE3	A	900	930	Right-handed alpha
Helix 40	AE4	A	936	941	Right-handed alpha
Helix 41	AE5	A	944	964	Right-handed alpha
Helix 42	AE6	A	966	971	Right-handed alpha
Helix 43	AE7	A	977	982	Right-handed alpha
Helix 44	AE8	A	984	1005	Right-handed alpha
Helix 45	AE9	A	1008	1015	Right-handed alpha
Helix 46	AF1	B	29	59	Right-handed alpha
Helix 47	AF2	B	69	73	Right-handed 310
Helix 48	AF3	B	83	85	Right-handed 310
Helix 49	AF4	B	98	110	Right-handed alpha
Helix 50	AF5	B	111	113	Right-handed 310
Helix 51	AF6	B	152	156	Right-handed 310
Helix 52	AF7	B	168	172	Right-handed 310
Helix 53	AF8	B	219	225	Right-handed alpha
Helix 54	AF9	B	231	235	Right-handed 310
Helix 55	AG1	B	241	243	Right-handed 310
Helix 56	AG2	B	246	251	Right-handed alpha
Helix 57	AG3	G	22	46	Right-handed alpha
Helix 58	AG4	C	25	32	Right-handed alpha
Helix 59	AG5	C	40	49	Right-handed alpha
Helix 60	AG6	C	57	69	Right-handed alpha
Helix 61	AG7	C	82	90	Right-handed alpha
Helix 62	AG8	C	91	114	Right-handed alpha
Helix 63	AG9	C	120	156	Right-handed alpha
Helix 64	AH1	C	176	178	Right-handed 310
Helix 65	AH2	C	208	213	Right-handed alpha
Helix 66	AH3	C	254	257	Right-handed 310
Helix 67	AH4	C	258	268	Right-handed alpha
Helix 68	AH5	C	275	306	Right-handed alpha
Helix 69	AH6	C	311	325	Right-handed alpha
Helix 70	AH7	C	328	347	Right-handed alpha
Helix 71	AH8	C	355	360	Right-handed alpha
Helix 72	AH9	C	408	421	Right-handed alpha
Helix 73	AI1	C	443	457	Right-handed alpha
Helix 74	AI2	C	459	467	Right-handed alpha
Helix 75	AI3	C	503	510	Right-handed alpha
Helix 76	AI4	C	524	541	Right-handed alpha
Helix 77	AI5	C	591	602	Right-handed alpha
Helix 78	AI6	C	613	625	Right-handed alpha
Helix 79	AI7	C	633	642	Right-handed alpha
Helix 80	AI8	C	649	653	Right-handed 310
Helix 81	AI9	C	660	665	Right-handed alpha
Helix 82	AJ1	C	667	677	Right-handed alpha
Helix 83	AJ2	C	689	701	Right-handed alpha
Helix 84	AJ3	C	714	721	Right-handed alpha
Helix 85	AJ4	C	732	739	Right-handed alpha
Helix 86	AJ5	C	747	773	Right-handed alpha
Helix 87	AJ6	C	775	790	Right-handed alpha
Helix 88	AJ7	C	796	808	Right-handed alpha
Helix 89	AJ8	C	809	815	Right-handed alpha
Helix 90	AJ9	C	816	818	Right-handed 310
Helix 91	AK1	C	839	847	Right-handed alpha
Helix 92	AK2	C	849	870	Right-handed alpha
Helix 93	AK3	C	873	877	Right-handed 310
Helix 94	AK4	C	879	884	Right-handed alpha
Helix 95	AK5	C	900	930	Right-handed alpha
Helix 96	AK6	C	936	941	Right-handed alpha
Helix 97	AK7	C	944	964	Right-handed alpha
Helix 98	AK8	C	966	971	Right-handed alpha
Helix 99	AK9	C	977	982	Right-handed alpha
Helix 100	AL1	C	984	1004	Right-handed alpha
Helix 101	AL2	C	1008	1015	Right-handed alpha
Helix 102	AL3	D	29	59	Right-handed alpha
Helix 103	AL4	D	69	73	Right-handed 310
Helix 104	AL5	D	83	85	Right-handed 310
Helix 105	AL6	D	98	110	Right-handed alpha
Helix 106	AL7	D	111	113	Right-handed 310
Helix 107	AL8	D	140	144	Right-handed 310
Helix 108	AL9	D	152	156	Right-handed 310
Helix 109	AM1	D	168	172	Right-handed 310
Helix 110	AM2	D	192	196	Right-handed 310
Helix 111	AM3	D	219	225	Right-handed alpha
Helix 112	AM4	D	231	235	Right-handed 310
Helix 113	AM5	D	241	243	Right-handed 310
Helix 114	AM6	D	246	251	Right-handed alpha
Helix 115	AM7	E	22	46	Right-handed alpha

There are 22 sheets in PDB entry 8JBK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	174	first strand
Strand 2	A	161	166	anti-parallel
Strand 3	A	183	187	anti-parallel
Strand 4	A	241	253	anti-parallel
Strand 5	A	195	207	anti-parallel
Strand 6	A	218	220	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	174	first strand
Strand 2	A	161	166	anti-parallel
Strand 3	A	183	187	anti-parallel
Strand 4	A	241	253	anti-parallel
Strand 5	A	195	207	anti-parallel
Strand 6	A	235	236	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	351	first strand
Strand 2	A	741	743	anti-parallel
Strand 3	A	723	727	parallel
Strand 4	A	705	709	parallel
Strand 5	A	365	368	parallel
Strand 6	A	605	609	parallel
Strand 7	A	680	684	parallel
Strand 8	A	655	659	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	392	first strand
Strand 2	A	380	386	anti-parallel
Strand 3	A	576	585	anti-parallel
Strand 4	A	543	553	anti-parallel
Strand 5	A	496	502	anti-parallel
Strand 6	A	481	487	anti-parallel
Strand 7	A	469	473	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	392	first strand
Strand 2	A	380	386	anti-parallel
Strand 3	A	576	585	anti-parallel
Strand 4	A	511	516	parallel
Strand 5	A	519	522	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	440	441	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	891	892	first strand
Strand 2	A	898	899	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	18	first strand
Strand 2	B	23	24	anti-parallel
Strand 3	B	27	28	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	175	180	anti-parallel
Strand 3	B	258	264	anti-parallel
Strand 4	B	226	230	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	294	301	parallel
Strand 3	B	271	278	anti-parallel
Strand 4	B	208	214	anti-parallel
Strand 5	B	237	239	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	148	149	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	174	first strand
Strand 2	C	161	166	anti-parallel
Strand 3	C	183	187	anti-parallel
Strand 4	C	241	253	anti-parallel
Strand 5	C	195	207	anti-parallel
Strand 6	C	218	220	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	174	first strand
Strand 2	C	161	166	anti-parallel
Strand 3	C	183	187	anti-parallel
Strand 4	C	241	253	anti-parallel
Strand 5	C	195	207	anti-parallel
Strand 6	C	235	236	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	351	first strand
Strand 2	C	741	743	anti-parallel
Strand 3	C	723	727	parallel
Strand 4	C	705	709	parallel
Strand 5	C	365	368	parallel
Strand 6	C	605	609	parallel
Strand 7	C	680	684	parallel
Strand 8	C	655	659	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	392	first strand
Strand 2	C	380	386	anti-parallel
Strand 3	C	576	585	anti-parallel
Strand 4	C	543	553	anti-parallel
Strand 5	C	496	502	anti-parallel
Strand 6	C	481	487	anti-parallel
Strand 7	C	469	473	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	392	first strand
Strand 2	C	380	386	anti-parallel
Strand 3	C	576	585	anti-parallel
Strand 4	C	511	516	parallel
Strand 5	C	519	522	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	426	first strand
Strand 2	C	440	441	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	891	892	first strand
Strand 2	C	898	899	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	18	first strand
Strand 2	D	23	24	anti-parallel
Strand 3	D	27	28	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	80	first strand
Strand 2	D	175	180	anti-parallel
Strand 3	D	258	264	anti-parallel
Strand 4	D	226	230	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	90	first strand
Strand 2	D	294	301	parallel
Strand 3	D	271	278	anti-parallel
Strand 4	D	208	214	anti-parallel
Strand 5	D	237	239	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	D	148	149	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JBK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JBK