Analysis of interatomic Contacts of Structural Units in PDB entry:
8JBM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JBM entry

There are 2 chains in PDB entry 8JBM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 22	TYR 1016
B	LYS 13	ARG 290

There are113 helices in PDB entry 8JBM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	49	Right-handed alpha
Helix 2	AA2	A	57	69	Right-handed alpha
Helix 3	AA3	A	80	90	Right-handed alpha
Helix 4	AA4	A	91	114	Right-handed alpha
Helix 5	AA5	A	120	153	Right-handed alpha
Helix 6	AA6	A	154	157	Right-handed 310
Helix 7	AA7	A	176	178	Right-handed 310
Helix 8	AA8	A	254	257	Right-handed 310
Helix 9	AA9	A	258	267	Right-handed alpha
Helix 10	AB1	A	275	306	Right-handed alpha
Helix 11	AB2	A	309	325	Right-handed alpha
Helix 12	AB3	A	328	347	Right-handed alpha
Helix 13	AB4	A	355	360	Right-handed alpha
Helix 14	AB5	A	361	363	Right-handed 310
Helix 15	AB6	A	408	421	Right-handed alpha
Helix 16	AB7	A	443	457	Right-handed alpha
Helix 17	AB8	A	459	467	Right-handed alpha
Helix 18	AB9	A	503	510	Right-handed alpha
Helix 19	AC1	A	524	540	Right-handed alpha
Helix 20	AC2	A	591	602	Right-handed alpha
Helix 21	AC3	A	613	624	Right-handed alpha
Helix 22	AC4	A	633	642	Right-handed alpha
Helix 23	AC5	A	644	648	Right-handed 310
Helix 24	AC6	A	649	653	Right-handed 310
Helix 25	AC7	A	659	665	Right-handed alpha
Helix 26	AC8	A	667	677	Right-handed alpha
Helix 27	AC9	A	687	689	Right-handed 310
Helix 28	AD1	A	690	701	Right-handed alpha
Helix 29	AD2	A	714	721	Right-handed alpha
Helix 30	AD3	A	732	739	Right-handed alpha
Helix 31	AD4	A	747	773	Right-handed alpha
Helix 32	AD5	A	775	789	Right-handed alpha
Helix 33	AD6	A	796	805	Right-handed alpha
Helix 34	AD7	A	810	815	Right-handed alpha
Helix 35	AD8	A	816	818	Right-handed 310
Helix 36	AD9	A	839	847	Right-handed alpha
Helix 37	AE1	A	849	870	Right-handed alpha
Helix 38	AE2	A	879	885	Right-handed alpha
Helix 39	AE3	A	900	931	Right-handed alpha
Helix 40	AE4	A	936	941	Right-handed alpha
Helix 41	AE5	A	944	964	Right-handed alpha
Helix 42	AE6	A	977	982	Right-handed alpha
Helix 43	AE7	A	984	1005	Right-handed alpha
Helix 44	AE8	A	1008	1015	Right-handed alpha
Helix 45	AE9	B	29	59	Right-handed alpha
Helix 46	AF1	B	83	85	Right-handed 310
Helix 47	AF2	B	98	110	Right-handed alpha
Helix 48	AF3	B	111	113	Right-handed 310
Helix 49	AF4	B	152	156	Right-handed 310
Helix 50	AF5	B	168	172	Right-handed 310
Helix 51	AF6	B	192	196	Right-handed 310
Helix 52	AF7	B	217	224	Right-handed alpha
Helix 53	AF8	B	233	235	Right-handed 310
Helix 54	AF9	B	241	243	Right-handed 310
Helix 55	AG1	B	246	251	Right-handed alpha
Helix 56	AG2	G	22	46	Right-handed alpha
Helix 57	AG3	C	40	49	Right-handed alpha
Helix 58	AG4	C	57	69	Right-handed alpha
Helix 59	AG5	C	80	90	Right-handed alpha
Helix 60	AG6	C	93	114	Right-handed alpha
Helix 61	AG7	C	120	156	Right-handed alpha
Helix 62	AG8	C	176	178	Right-handed 310
Helix 63	AG9	C	209	211	Right-handed 310
Helix 64	AH1	C	254	258	Right-handed 310
Helix 65	AH2	C	260	268	Right-handed alpha
Helix 66	AH3	C	275	306	Right-handed alpha
Helix 67	AH4	C	309	325	Right-handed alpha
Helix 68	AH5	C	328	347	Right-handed alpha
Helix 69	AH6	C	354	360	Right-handed alpha
Helix 70	AH7	C	408	421	Right-handed alpha
Helix 71	AH8	C	443	457	Right-handed alpha
Helix 72	AH9	C	459	467	Right-handed alpha
Helix 73	AI1	C	503	510	Right-handed alpha
Helix 74	AI2	C	524	540	Right-handed alpha
Helix 75	AI3	C	591	602	Right-handed alpha
Helix 76	AI4	C	613	624	Right-handed alpha
Helix 77	AI5	C	633	642	Right-handed alpha
Helix 78	AI6	C	649	653	Right-handed 310
Helix 79	AI7	C	660	665	Right-handed alpha
Helix 80	AI8	C	667	677	Right-handed alpha
Helix 81	AI9	C	687	689	Right-handed 310
Helix 82	AJ1	C	690	701	Right-handed alpha
Helix 83	AJ2	C	714	721	Right-handed alpha
Helix 84	AJ3	C	732	739	Right-handed alpha
Helix 85	AJ4	C	747	775	Right-handed alpha
Helix 86	AJ5	C	775	789	Right-handed alpha
Helix 87	AJ6	C	796	807	Right-handed alpha
Helix 88	AJ7	C	808	815	Right-handed alpha
Helix 89	AJ8	C	816	818	Right-handed 310
Helix 90	AJ9	C	839	847	Right-handed alpha
Helix 91	AK1	C	849	870	Right-handed alpha
Helix 92	AK2	C	873	877	Right-handed 310
Helix 93	AK3	C	879	884	Right-handed alpha
Helix 94	AK4	C	900	931	Right-handed alpha
Helix 95	AK5	C	936	941	Right-handed alpha
Helix 96	AK6	C	944	964	Right-handed alpha
Helix 97	AK7	C	966	971	Right-handed alpha
Helix 98	AK8	C	977	981	Right-handed 310
Helix 99	AK9	C	984	1004	Right-handed alpha
Helix 100	AL1	C	1008	1015	Right-handed alpha
Helix 101	AL2	D	29	59	Right-handed alpha
Helix 102	AL3	D	69	73	Right-handed 310
Helix 103	AL4	D	83	85	Right-handed 310
Helix 104	AL5	D	98	110	Right-handed alpha
Helix 105	AL6	D	111	113	Right-handed 310
Helix 106	AL7	D	140	144	Right-handed 310
Helix 107	AL8	D	152	156	Right-handed 310
Helix 108	AL9	D	192	196	Right-handed 310
Helix 109	AM1	D	217	225	Right-handed alpha
Helix 110	AM2	D	231	235	Right-handed 310
Helix 111	AM3	D	241	243	Right-handed 310
Helix 112	AM4	D	246	251	Right-handed alpha
Helix 113	AM5	E	22	46	Right-handed alpha

There are 22 sheets in PDB entry 8JBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	174	first strand
Strand 2	A	161	166	anti-parallel
Strand 3	A	183	187	anti-parallel
Strand 4	A	241	253	anti-parallel
Strand 5	A	195	207	anti-parallel
Strand 6	A	217	220	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	174	first strand
Strand 2	A	161	166	anti-parallel
Strand 3	A	183	187	anti-parallel
Strand 4	A	241	253	anti-parallel
Strand 5	A	195	207	anti-parallel
Strand 6	A	235	236	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	351	first strand
Strand 2	A	741	743	anti-parallel
Strand 3	A	723	727	parallel
Strand 4	A	705	709	parallel
Strand 5	A	365	369	parallel
Strand 6	A	605	609	parallel
Strand 7	A	680	683	parallel
Strand 8	A	655	658	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	392	first strand
Strand 2	A	380	386	anti-parallel
Strand 3	A	576	585	anti-parallel
Strand 4	A	543	552	anti-parallel
Strand 5	A	497	502	anti-parallel
Strand 6	A	483	487	anti-parallel
Strand 7	A	468	473	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	392	first strand
Strand 2	A	380	386	anti-parallel
Strand 3	A	576	585	anti-parallel
Strand 4	A	511	516	parallel
Strand 5	A	519	522	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	440	441	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	891	892	first strand
Strand 2	A	898	899	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	18	first strand
Strand 2	B	23	24	anti-parallel
Strand 3	B	27	28	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	177	180	anti-parallel
Strand 3	B	258	264	anti-parallel
Strand 4	B	226	231	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	294	301	parallel
Strand 3	B	272	278	anti-parallel
Strand 4	B	208	214	anti-parallel
Strand 5	B	237	239	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	148	149	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	174	first strand
Strand 2	C	161	166	anti-parallel
Strand 3	C	183	187	anti-parallel
Strand 4	C	241	253	anti-parallel
Strand 5	C	195	207	anti-parallel
Strand 6	C	217	220	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	174	first strand
Strand 2	C	161	166	anti-parallel
Strand 3	C	183	187	anti-parallel
Strand 4	C	241	253	anti-parallel
Strand 5	C	195	207	anti-parallel
Strand 6	C	235	236	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	351	first strand
Strand 2	C	741	743	anti-parallel
Strand 3	C	723	727	parallel
Strand 4	C	705	709	parallel
Strand 5	C	365	368	parallel
Strand 6	C	605	609	parallel
Strand 7	C	680	684	parallel
Strand 8	C	655	659	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	392	first strand
Strand 2	C	380	386	anti-parallel
Strand 3	C	576	585	anti-parallel
Strand 4	C	543	551	anti-parallel
Strand 5	C	497	502	anti-parallel
Strand 6	C	481	486	anti-parallel
Strand 7	C	469	473	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	392	first strand
Strand 2	C	380	386	anti-parallel
Strand 3	C	576	585	anti-parallel
Strand 4	C	511	516	parallel
Strand 5	C	519	522	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	426	first strand
Strand 2	C	440	441	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	891	892	first strand
Strand 2	C	898	899	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	18	first strand
Strand 2	D	23	24	anti-parallel
Strand 3	D	27	28	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	80	first strand
Strand 2	D	175	180	anti-parallel
Strand 3	D	258	264	anti-parallel
Strand 4	D	226	230	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	90	first strand
Strand 2	D	294	301	parallel
Strand 3	D	271	278	anti-parallel
Strand 4	D	208	215	anti-parallel
Strand 5	D	237	239	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	D	148	149	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JBM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JBM