Analysis of interatomic Contacts of Structural Units in PDB entry:
8JBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JBP entry

There are 2 chains in PDB entry 8JBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3ARG 251
B
 ALA 3ARG 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8JBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 32Right-handed alpha
Helix 2
AA2
A
45 47Right-handed 310
Helix 3
AA3
A
48 56Right-handed alpha
Helix 4
AA4
A
80 88Right-handed alpha
Helix 5
AA5
A
96 103Right-handed alpha
Helix 6
AA6
A
106 120Right-handed alpha
Helix 7
AA7
A
131 137Right-handed alpha
Helix 8
AA8
A
139 153Right-handed alpha
Helix 9
AA9
A
154 155Right-handed 310
Helix 10
AB1
A
156 161Right-handed 310
Helix 11
AB2
A
180 199Right-handed alpha
Helix 12
AB3
A
200 207Right-handed alpha
Helix 13
AB4
A
219 225Right-handed alpha
Helix 14
AB5
A
235 241Right-handed 310
Helix 15
AB6
A
242 249Right-handed alpha
Helix 16
AB7
B
18 32Right-handed alpha
Helix 17
AB8
B
45 47Right-handed 310
Helix 18
AB9
B
48 56Right-handed alpha
Helix 19
AC1
B
80 88Right-handed alpha
Helix 20
AC2
B
96 103Right-handed alpha
Helix 21
AC3
B
106 120Right-handed alpha
Helix 22
AC4
B
131 137Right-handed alpha
Helix 23
AC5
B
139 154Right-handed alpha
Helix 24
AC6
B
155 161Right-handed 310
Helix 25
AC7
B
169 173Right-handed 310
Helix 26
AC8
B
180 199Right-handed alpha
Helix 27
AC9
B
200 207Right-handed alpha
Helix 28
AD1
B
219 225Right-handed alpha
Helix 29
AD2
B
235 241Right-handed 310
Helix 30
AD3
B
242 249Right-handed alpha
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There are 2 sheets in PDB entry 8JBP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
39 43parallel
Strand 3
A
61 65parallel
Strand 4
A
91 94parallel
Strand 5
A
123 128parallel
Strand 6
A
163 167parallel
Strand 7
A
209 211parallel
Strand 8
A
231 234parallel
Strand 9
A
8 12parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
39 43parallel
Strand 3
B
61 65parallel
Strand 4
B
91 94parallel
Strand 5
B
123 128parallel
Strand 6
B
163 167parallel
Strand 7
B
208 211parallel
Strand 8
B
231 234parallel
Strand 9
B
8 12parallel
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