Analysis of interatomic Contacts of Structural Units in PDB entry:
8JBQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JBQ entry

There is 1 chain in PDB entry 8JBQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0LEU 713
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8JBQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 16Right-handed alpha
Helix 2
AA2
A
18 20Right-handed 310
Helix 3
AA3
A
28 32Right-handed 310
Helix 4
AA4
A
39 48Right-handed alpha
Helix 5
AA5
A
63 79Right-handed alpha
Helix 6
AA6
A
103 108Right-handed 310
Helix 7
AA7
A
150 152Right-handed 310
Helix 8
AA8
A
297 301Right-handed 310
Helix 9
AA9
A
346 350Right-handed 310
Helix 10
AB1
A
365 369Right-handed 310
Helix 11
AB2
A
448 453Right-handed 310
Helix 12
AB3
A
486 489Right-handed 310
Helix 13
AB4
A
523 526Right-handed 310
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There are 15 sheets in PDB entry 8JBQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 26first strand
Strand 2
A
53 57parallel
Strand 3
A
86 92anti-parallel
Strand 4
A
95 101anti-parallel
Strand 5
A
137 147parallel
Strand 6
A
175 187anti-parallel
Strand 7
A
215 217anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 26first strand
Strand 2
A
53 57parallel
Strand 3
A
86 92anti-parallel
Strand 4
A
95 101anti-parallel
Strand 5
A
137 147parallel
Strand 6
A
175 187anti-parallel
Strand 7
A
200 207anti-parallel
Strand 8
A
381 387anti-parallel
Strand 9
A
262 267anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
167 169anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 228first strand
Strand 2
A
237 256anti-parallel
Strand 3
A
394 416anti-parallel
Strand 4
A
421 428anti-parallel
Strand 5
A
354 355anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 330first strand
Strand 2
A
333 340anti-parallel
Strand 3
A
237 256anti-parallel
Strand 4
A
394 416anti-parallel
Strand 5
A
434 445anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 288first strand
Strand 2
A
307 318anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 461first strand
Strand 2
A
569 570anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 471first strand
Strand 2
A
477 481anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 493first strand
Strand 2
A
499 501anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 508first strand
Strand 2
A
518 519anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 530first strand
Strand 2
A
537 539anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 558first strand
Strand 2
A
545 549anti-parallel
Strand 3
A
565 566anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 587first strand
Strand 2
A
704 712anti-parallel
Strand 3
A
691 699anti-parallel
Strand 4
A
594 597anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 624first strand
Strand 2
A
612 616anti-parallel
Strand 3
A
603 608anti-parallel
Strand 4
A
629 634anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
667 671first strand
Strand 2
A
653 662anti-parallel
Strand 3
A
638 648anti-parallel
Strand 4
A
676 685anti-parallel
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