Analysis of interatomic Contacts of Structural Units in PDB entry:
8JBR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JBR entry

There is 1 chain in PDB entry 8JBR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1269	THR 2306

There are 36 helices in PDB entry 8JBR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1286	1297	Right-handed alpha
Helix 2	AA2	A	1318	1333	Right-handed alpha
Helix 3	AA3	A	1334	1336	Right-handed 310
Helix 4	AA4	A	1369	1386	Right-handed alpha
Helix 5	AA5	A	1421	1437	Right-handed alpha
Helix 6	AA6	A	1438	1441	Right-handed 310
Helix 7	AA7	A	1454	1467	Right-handed alpha
Helix 8	AA8	A	1468	1479	Right-handed alpha
Helix 9	AA9	A	1507	1522	Right-handed alpha
Helix 10	AB1	A	1524	1542	Right-handed alpha
Helix 11	AB2	A	1582	1596	Right-handed alpha
Helix 12	AB3	A	1598	1603	Right-handed 310
Helix 13	AB4	A	1604	1609	Right-handed alpha
Helix 14	AB5	A	1677	1698	Right-handed alpha
Helix 15	AB6	A	1710	1719	Right-handed alpha
Helix 16	AB7	A	1720	1723	Right-handed 310
Helix 17	AB8	A	1732	1744	Right-handed alpha
Helix 18	AB9	A	1759	1777	Right-handed alpha
Helix 19	AC1	A	1791	1805	Right-handed alpha
Helix 20	AC2	A	1816	1828	Right-handed alpha
Helix 21	AC3	A	1835	1840	Right-handed alpha
Helix 22	AC4	A	1855	1861	Right-handed alpha
Helix 23	AC5	A	1896	1910	Right-handed alpha
Helix 24	AC6	A	1927	1940	Right-handed alpha
Helix 25	AC7	A	1948	1961	Right-handed 310
Helix 26	AC8	A	1967	1977	Right-handed alpha
Helix 27	AC9	A	1995	2005	Right-handed alpha
Helix 28	AD1	A	2017	2021	Right-handed 310
Helix 29	AD2	A	2080	2087	Right-handed alpha
Helix 30	AD3	A	2179	2187	Right-handed alpha
Helix 31	AD4	A	2213	2217	Right-handed 310
Helix 32	AD5	A	2237	2250	Right-handed alpha
Helix 33	AD6	A	2260	2264	Right-handed 310
Helix 34	AD7	A	2266	2279	Right-handed alpha
Helix 35	AD8	A	2285	2292	Right-handed alpha
Helix 36	AD9	A	2294	2302	Right-handed alpha

There are 10 sheets in PDB entry 8JBR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1279	1284	first strand
Strand 2	A	1349	1353	anti-parallel
Strand 3	A	1338	1341	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1360	1364	first strand
Strand 2	A	1397	1403	parallel
Strand 3	A	1408	1416	anti-parallel
Strand 4	A	1306	1314	anti-parallel
Strand 5	A	1643	1645	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1501	1504	first strand
Strand 2	A	1665	1671	anti-parallel
Strand 3	A	1652	1658	anti-parallel
Strand 4	A	1618	1623	parallel
Strand 5	A	1545	1552	parallel
Strand 6	A	1570	1577	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1756	1758	first strand
Strand 2	A	1748	1751	anti-parallel
Strand 3	A	1942	1945	parallel
Strand 4	A	1917	1920	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1807	1811	first strand
Strand 2	A	1783	1787	parallel
Strand 3	A	1831	1834	parallel
Strand 4	A	1848	1851	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1876	1883	first strand
Strand 2	A	1889	1895	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1963	1966	first strand
Strand 2	A	1986	1989	parallel
Strand 3	A	2010	2015	parallel
Strand 4	A	2025	2028	anti-parallel
Strand 5	A	2041	2042	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2046	2051	first strand
Strand 2	A	2064	2070	anti-parallel
Strand 3	A	2100	2110	anti-parallel
Strand 4	A	2088	2090	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2046	2051	first strand
Strand 2	A	2064	2070	anti-parallel
Strand 3	A	2100	2110	anti-parallel
Strand 4	A	2116	2121	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2152	2155	first strand
Strand 2	A	2165	2168	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JBR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JBR