Analysis of interatomic Contacts of Structural Units in PDB entry:
8JBS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JBS entry

There are 2 chains in PDB entry 8JBS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 9ALA 235
B
 LEU 13PRO 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8JBS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 20Right-handed alpha
Helix 2
AA2
A
21 34Right-handed alpha
Helix 3
AA3
A
37 51Right-handed alpha
Helix 4
AA4
A
54 62Right-handed alpha
Helix 5
AA5
A
62 76Right-handed alpha
Helix 6
AA6
A
80 100Right-handed alpha
Helix 7
AA7
A
123 136Right-handed alpha
Helix 8
AA8
A
148 160Right-handed alpha
Helix 9
AA9
A
173 191Right-handed alpha
Helix 10
AB1
A
199 203Right-handed 310
Helix 11
AB2
A
204 211Right-handed alpha
Helix 12
AB3
A
219 231Right-handed alpha
Helix 13
AB4
B
14 20Right-handed alpha
Helix 14
AB5
B
21 36Right-handed alpha
Helix 15
AB6
B
37 50Right-handed alpha
Helix 16
AB7
B
54 62Right-handed alpha
Helix 17
AB8
B
62 76Right-handed alpha
Helix 18
AB9
B
80 100Right-handed alpha
Helix 19
AC1
B
123 136Right-handed alpha
Helix 20
AC2
B
148 158Right-handed alpha
Helix 21
AC3
B
173 190Right-handed alpha
Helix 22
AC4
B
200 203Right-handed 310
Helix 23
AC5
B
204 211Right-handed alpha
Helix 24
AC6
B
220 231Right-handed alpha
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There are 2 sheets in PDB entry 8JBS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 147first strand
Strand 2
A
111 117parallel
Strand 3
A
163 167parallel
Strand 4
A
194 198parallel
Strand 5
A
215 216parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 144first strand
Strand 2
B
111 115parallel
Strand 3
B
163 167parallel
Strand 4
B
194 198parallel
Strand 5
B
215 217parallel
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