Analysis of interatomic Contacts of Structural Units in PDB entry:
8JBV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JBV entry

There are 4 chains in PDB entry 8JBV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
m	GLN 22	VAL 224
n	THR 11	PRO 231
M	GLN 22	VAL 224
N	THR 11	PRO 231

There are 6 helices in PDB entry 8JBV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	m	211	215	Right-handed 310
Helix 2	AA2	n	89	93	Right-handed 310
Helix 3	AA3	n	144	149	Right-handed alpha
Helix 4	AA4	M	211	215	Right-handed 310
Helix 5	AA5	N	89	93	Right-handed 310
Helix 6	AA6	N	144	149	Right-handed alpha

There are 20 sheets in PDB entry 8JBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	23	25	first strand
Strand 2	m	38	46	anti-parallel
Strand 3	m	93	99	anti-parallel
Strand 4	m	83	88	anti-parallel
Strand 5	m	79	80	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	30	34	first strand
Strand 2	m	130	135	parallel
Strand 3	m	107	113	anti-parallel
Strand 4	m	53	59	anti-parallel
Strand 5	m	65	72	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	30	34	first strand
Strand 2	m	130	135	parallel
Strand 3	m	107	113	anti-parallel
Strand 4	m	125	126	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	146	150	first strand
Strand 2	m	154	162	anti-parallel
Strand 3	m	192	199	anti-parallel
Strand 4	m	183	186	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	13	14	first strand
Strand 2	n	120	121	parallel
Strand 3	n	94	101	anti-parallel
Strand 4	n	35	41	anti-parallel
Strand 5	n	48	54	anti-parallel
Strand 6	n	59	61	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	13	14	first strand
Strand 2	n	120	121	parallel
Strand 3	n	94	101	anti-parallel
Strand 4	n	113	114	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	21	25	first strand
Strand 2	n	82	86	anti-parallel
Strand 3	n	71	74	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	152	153	first strand
Strand 2	n	200	201	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	156	159	first strand
Strand 2	n	193	197	anti-parallel
Strand 3	n	187	188	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	167	171	first strand
Strand 2	n	210	215	anti-parallel
Strand 3	n	228	229	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	23	25	first strand
Strand 2	M	38	46	anti-parallel
Strand 3	M	93	99	anti-parallel
Strand 4	M	83	88	anti-parallel
Strand 5	M	79	80	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	30	34	first strand
Strand 2	M	130	135	parallel
Strand 3	M	107	113	anti-parallel
Strand 4	M	53	59	anti-parallel
Strand 5	M	65	72	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	30	34	first strand
Strand 2	M	130	135	parallel
Strand 3	M	107	113	anti-parallel
Strand 4	M	125	126	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	146	150	first strand
Strand 2	M	154	162	anti-parallel
Strand 3	M	192	199	anti-parallel
Strand 4	M	183	186	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	13	14	first strand
Strand 2	N	120	121	parallel
Strand 3	N	94	101	anti-parallel
Strand 4	N	35	41	anti-parallel
Strand 5	N	48	54	anti-parallel
Strand 6	N	59	61	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	13	14	first strand
Strand 2	N	120	121	parallel
Strand 3	N	94	101	anti-parallel
Strand 4	N	113	114	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	21	25	first strand
Strand 2	N	82	86	anti-parallel
Strand 3	N	71	74	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	152	153	first strand
Strand 2	N	200	201	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	156	159	first strand
Strand 2	N	193	197	anti-parallel
Strand 3	N	187	188	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	167	171	first strand
Strand 2	N	210	215	anti-parallel
Strand 3	N	228	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JBV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JBV