Analysis of interatomic Contacts of Structural Units in PDB entry:
8JBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JBY entry

There are 2 chains in PDB entry 8JBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1685SER 1971
B
 LYS 1694LYS 1968
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8JBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1685 1709Right-handed alpha
Helix 2
AA2
A
1724 1731Right-handed 310
Helix 3
AA3
A
1782 1793Right-handed alpha
Helix 4
AA4
A
1876 1892Right-handed alpha
Helix 5
AA5
A
1908 1926Right-handed alpha
Helix 6
AA6
A
1931 1943Right-handed alpha
Helix 7
AA7
A
1949 1969Right-handed alpha
Helix 8
AA8
B
1695 1710Right-handed alpha
Helix 9
AA9
B
1720 1731Right-handed 310
Helix 10
AB1
B
1739 1741Right-handed 310
Helix 11
AB2
B
1782 1793Right-handed alpha
Helix 12
AB3
B
1876 1893Right-handed alpha
Helix 13
AB4
B
1908 1927Right-handed alpha
Helix 14
AB5
B
1931 1943Right-handed alpha
Helix 15
AB6
B
1949 1968Right-handed alpha
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There are 4 sheets in PDB entry 8JBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1743 1745first strand
Strand 2
A
1757 1763anti-parallel
Strand 3
A
1772 1775anti-parallel
Strand 4
A
1900 1903parallel
Strand 5
A
1797 1800parallel
Strand 6
A
1858 1865parallel
Strand 7
A
1841 1850anti-parallel
Strand 8
A
1828 1837anti-parallel
Strand 9
A
1823 1825anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1805 1806first strand
Strand 2
A
1809 1810anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1743 1745first strand
Strand 2
B
1757 1763anti-parallel
Strand 3
B
1772 1775anti-parallel
Strand 4
B
1900 1903parallel
Strand 5
B
1797 1800parallel
Strand 6
B
1858 1865parallel
Strand 7
B
1841 1850anti-parallel
Strand 8
B
1828 1837anti-parallel
Strand 9
B
1823 1825anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1805 1806first strand
Strand 2
B
1809 1810anti-parallel
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