Analysis of interatomic Contacts of Structural Units in PDB entry:
8JC0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JC0 entry

There are 8 chains in PDB entry 8JC0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	LEU 26	SER 56
b	LEU 27	LYS 54
d	PHE 22	ALA 126
e	GLN 33	LYS 153
f	GLN 33	ASN 154
g	LYS 26	ASP 140
m	THR 256	PHE 289
n	THR 252	THR 288

There are 12 helices in PDB entry 8JC0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	31	56	Right-handed alpha
Helix 2	AA2	b	28	52	Right-handed alpha
Helix 3	AA3	d	100	126	Right-handed alpha
Helix 4	AA4	e	104	108	Right-handed 310
Helix 5	AA5	e	127	151	Right-handed alpha
Helix 6	AA6	f	104	108	Right-handed 310
Helix 7	AA7	f	132	154	Right-handed alpha
Helix 8	AA8	g	78	80	Right-handed 310
Helix 9	AA9	g	113	140	Right-handed alpha
Helix 10	AB1	m	258	289	Right-handed alpha
Helix 11	AB2	n	253	269	Right-handed alpha
Helix 12	AB3	n	269	286	Right-handed alpha

There are 10 sheets in PDB entry 8JC0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	32	36	first strand
Strand 2	d	57	62	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	42	46	first strand
Strand 2	d	69	73	anti-parallel
Strand 3	d	84	91	anti-parallel
Strand 4	e	111	116	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	96	98	first strand
Strand 2	e	122	124	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	38	41	first strand
Strand 2	e	44	47	anti-parallel
Strand 3	e	82	84	anti-parallel
Strand 4	e	76	77	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	57	59	first strand
Strand 2	e	98	100	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	37	41	first strand
Strand 2	f	44	48	anti-parallel
Strand 3	f	81	84	anti-parallel
Strand 4	f	76	77	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	65	66	first strand
Strand 2	f	57	61	anti-parallel
Strand 3	f	96	100	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	111	114	first strand
Strand 2	g	97	100	parallel
Strand 3	g	84	88	anti-parallel
Strand 4	g	54	57	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	122	123	first strand
Strand 2	g	108	109	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	31	34	first strand
Strand 2	g	41	46	anti-parallel
Strand 3	g	71	76	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JC0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JC0