Analysis of interatomic Contacts of Structural Units in PDB entry:
8JC1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JC1 entry

There are 4 chains in PDB entry 8JC1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LEU 268
B	ALA 2	LEU 268
C	ALA 2	LEU 268
D	ALA 2	LEU 268

There are 52 helices in PDB entry 8JC1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	31	Right-handed alpha
Helix 2	AA2	A	66	69	Right-handed 310
Helix 3	AA3	A	90	95	Right-handed 310
Helix 4	AA4	A	98	109	Right-handed alpha
Helix 5	AA5	A	110	114	Right-handed 310
Helix 6	AA6	A	122	135	Right-handed alpha
Helix 7	AA7	A	143	147	Right-handed 310
Helix 8	AA8	A	152	155	Right-handed 310
Helix 9	AA9	A	156	165	Right-handed alpha
Helix 10	AB1	A	182	184	Right-handed 310
Helix 11	AB2	A	185	190	Right-handed alpha
Helix 12	AB3	A	227	236	Right-handed alpha
Helix 13	AB4	A	237	247	Right-handed alpha
Helix 14	AB5	B	22	30	Right-handed alpha
Helix 15	AB6	B	65	69	Right-handed 310
Helix 16	AB7	B	75	77	Right-handed 310
Helix 17	AB8	B	89	95	Right-handed alpha
Helix 18	AB9	B	98	109	Right-handed alpha
Helix 19	AC1	B	120	122	Right-handed 310
Helix 20	AC2	B	123	135	Right-handed alpha
Helix 21	AC3	B	143	147	Right-handed 310
Helix 22	AC4	B	152	155	Right-handed 310
Helix 23	AC5	B	156	165	Right-handed alpha
Helix 24	AC6	B	182	184	Right-handed 310
Helix 25	AC7	B	185	190	Right-handed alpha
Helix 26	AC8	B	227	235	Right-handed alpha
Helix 27	AC9	B	237	246	Right-handed alpha
Helix 28	AD1	C	22	30	Right-handed alpha
Helix 29	AD2	C	66	70	Right-handed alpha
Helix 30	AD3	C	89	96	Right-handed alpha
Helix 31	AD4	C	98	114	Right-handed alpha
Helix 32	AD5	C	122	135	Right-handed alpha
Helix 33	AD6	C	143	147	Right-handed 310
Helix 34	AD7	C	152	155	Right-handed 310
Helix 35	AD8	C	156	164	Right-handed alpha
Helix 36	AD9	C	182	184	Right-handed 310
Helix 37	AE1	C	185	190	Right-handed alpha
Helix 38	AE2	C	227	236	Right-handed alpha
Helix 39	AE3	C	236	244	Right-handed alpha
Helix 40	AE4	D	22	29	Right-handed alpha
Helix 41	AE5	D	66	69	Right-handed 310
Helix 42	AE6	D	89	95	Right-handed alpha
Helix 43	AE7	D	98	114	Right-handed alpha
Helix 44	AE8	D	120	122	Right-handed 310
Helix 45	AE9	D	123	135	Right-handed alpha
Helix 46	AF1	D	143	147	Right-handed 310
Helix 47	AF2	D	152	155	Right-handed 310
Helix 48	AF3	D	156	165	Right-handed alpha
Helix 49	AF4	D	182	184	Right-handed 310
Helix 50	AF5	D	185	190	Right-handed alpha
Helix 51	AF6	D	227	236	Right-handed alpha
Helix 52	AF7	D	236	246	Right-handed alpha

There are 16 sheets in PDB entry 8JC1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	18	first strand
Strand 2	A	3	8	anti-parallel
Strand 3	A	83	86	parallel
Strand 4	A	48	52	anti-parallel
Strand 5	A	71	72	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	78	79	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	141	first strand
Strand 2	A	251	254	parallel
Strand 3	A	222	224	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	180	first strand
Strand 2	A	194	205	anti-parallel
Strand 3	A	210	219	anti-parallel
Strand 4	A	259	266	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	18	first strand
Strand 2	B	3	8	anti-parallel
Strand 3	B	83	87	parallel
Strand 4	B	47	52	anti-parallel
Strand 5	B	71	73	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	78	79	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	141	first strand
Strand 2	B	251	254	parallel
Strand 3	B	222	224	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	180	first strand
Strand 2	B	194	205	anti-parallel
Strand 3	B	210	219	anti-parallel
Strand 4	B	259	266	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	18	first strand
Strand 2	C	3	8	anti-parallel
Strand 3	C	83	87	parallel
Strand 4	C	47	52	anti-parallel
Strand 5	C	71	73	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	78	79	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	141	first strand
Strand 2	C	251	254	parallel
Strand 3	C	222	224	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	180	first strand
Strand 2	C	194	205	anti-parallel
Strand 3	C	210	219	anti-parallel
Strand 4	C	259	266	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	18	first strand
Strand 2	D	3	8	anti-parallel
Strand 3	D	83	87	parallel
Strand 4	D	47	52	anti-parallel
Strand 5	D	71	73	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	56	first strand
Strand 2	D	78	79	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	141	first strand
Strand 2	D	251	254	parallel
Strand 3	D	222	224	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	180	first strand
Strand 2	D	194	205	anti-parallel
Strand 3	D	210	219	anti-parallel
Strand 4	D	259	266	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JC1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JC1