Analysis of interatomic Contacts of Structural Units in PDB entry:
8JC5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JC5 entry

There are 4 chains in PDB entry 8JC5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 18	SER 181
B	LYS 18	SER 181
C	ASP 10	ASP 205
D	ASP 10	ASP 205

There are 46 helices in PDB entry 8JC5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	43	Right-handed alpha
Helix 2	AA2	A	75	79	Right-handed 310
Helix 3	AA3	A	80	87	Right-handed alpha
Helix 4	AA4	A	100	102	Right-handed 310
Helix 5	AA5	A	103	116	Right-handed alpha
Helix 6	AA6	A	117	121	Right-handed 310
Helix 7	AA7	A	139	147	Right-handed alpha
Helix 8	AA8	A	148	152	Right-handed 310
Helix 9	AA9	A	169	179	Right-handed alpha
Helix 10	AB1	B	32	43	Right-handed alpha
Helix 11	AB2	B	75	79	Right-handed 310
Helix 12	AB3	B	80	87	Right-handed alpha
Helix 13	AB4	B	100	102	Right-handed 310
Helix 14	AB5	B	103	116	Right-handed alpha
Helix 15	AB6	B	117	121	Right-handed 310
Helix 16	AB7	B	139	147	Right-handed alpha
Helix 17	AB8	B	148	152	Right-handed 310
Helix 18	AB9	B	169	179	Right-handed alpha
Helix 19	AC1	C	13	33	Right-handed alpha
Helix 20	AC2	C	44	60	Right-handed alpha
Helix 21	AC3	C	63	68	Right-handed alpha
Helix 22	AC4	C	89	96	Right-handed alpha
Helix 23	AC5	C	98	107	Right-handed alpha
Helix 24	AC6	C	113	128	Right-handed alpha
Helix 25	AC7	C	130	141	Right-handed alpha
Helix 26	AC8	C	141	149	Right-handed alpha
Helix 27	AC9	C	153	156	Right-handed 310
Helix 28	AD1	C	157	170	Right-handed alpha
Helix 29	AD2	C	171	174	Right-handed 310
Helix 30	AD3	C	182	187	Right-handed 310
Helix 31	AD4	C	189	196	Right-handed alpha
Helix 32	AD5	C	200	204	Right-handed 310
Helix 33	AD6	D	13	33	Right-handed alpha
Helix 34	AD7	D	44	60	Right-handed alpha
Helix 35	AD8	D	63	65	Right-handed 310
Helix 36	AD9	D	89	95	Right-handed alpha
Helix 37	AE1	D	98	107	Right-handed alpha
Helix 38	AE2	D	113	129	Right-handed alpha
Helix 39	AE3	D	130	141	Right-handed alpha
Helix 40	AE4	D	141	149	Right-handed alpha
Helix 41	AE5	D	153	156	Right-handed 310
Helix 42	AE6	D	157	170	Right-handed alpha
Helix 43	AE7	D	171	174	Right-handed 310
Helix 44	AE8	D	182	187	Right-handed 310
Helix 45	AE9	D	189	196	Right-handed alpha
Helix 46	AF1	D	200	204	Right-handed 310

There are 6 sheets in PDB entry 8JC5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	62	first strand
Strand 2	A	65	72	anti-parallel
Strand 3	A	20	27	parallel
Strand 4	A	91	97	parallel
Strand 5	A	125	130	parallel
Strand 6	A	157	161	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	62	first strand
Strand 2	B	65	72	anti-parallel
Strand 3	B	19	27	parallel
Strand 4	B	91	97	parallel
Strand 5	B	125	130	parallel
Strand 6	B	157	161	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	175	176	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	80	81	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	D	176	177	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	86	87	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JC5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JC5