Analysis of interatomic Contacts of Structural Units in PDB entry:
8JCA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JCA entry

There are 2 chains in PDB entry 8JCA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 18SER 181
B
 MET 1TYR 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8JCA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 43Right-handed alpha
Helix 2
AA2
A
75 80Right-handed 310
Helix 3
AA3
A
81 87Right-handed alpha
Helix 4
AA4
A
100 102Right-handed 310
Helix 5
AA5
A
103 116Right-handed alpha
Helix 6
AA6
A
117 121Right-handed 310
Helix 7
AA7
A
139 147Right-handed alpha
Helix 8
AA8
A
148 152Right-handed 310
Helix 9
AA9
A
169 180Right-handed alpha
Helix 10
AB1
B
2 28Right-handed alpha
Helix 11
AB2
B
39 55Right-handed alpha
Helix 12
AB3
B
59 63Right-handed 310
Helix 13
AB4
B
64 69Right-handed alpha
Helix 14
AB5
B
70 72Right-handed 310
Helix 15
AB6
B
73 82Right-handed alpha
Helix 16
AB7
B
88 103Right-handed alpha
Helix 17
AB8
B
105 116Right-handed alpha
Helix 18
AB9
B
116 124Right-handed alpha
Helix 19
AC1
B
132 144Right-handed alpha
Helix 20
AC2
B
145 147Right-handed 310
Helix 21
AC3
B
157 162Right-handed 310
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There is 1 sheet (AA1) in PDB entry 8JCA.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 62first strand
Strand 2
A
65 72anti-parallel
Strand 3
A
19 27parallel
Strand 4
A
91 97parallel
Strand 5
A
125 130parallel
Strand 6
A
157 161parallel
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