Analysis of interatomic Contacts of Structural Units in PDB entry:
8JCB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JCB entry

There are 16 chains in PDB entry 8JCB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 26	SER 56
B	LEU 27	LYS 54
D	PHE 22	ALA 126
E	GLN 33	LYS 153
F	GLN 33	ASN 154
G	LYS 26	ASP 140
M	GLN 22	PHE 289
N	THR 11	THR 288
a	LEU 26	SER 56
b	LEU 27	LYS 54
d	PHE 22	ALA 126
e	GLN 33	LYS 153
f	GLN 33	ASN 154
g	LYS 26	ASP 140
m	GLN 22	PHE 289
n	THR 11	THR 288

There are 36 helices in PDB entry 8JCB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	33	Right-handed alpha
Helix 2	AA2	A	38	56	Right-handed alpha
Helix 3	AA3	B	28	52	Right-handed alpha
Helix 4	AA4	D	107	126	Right-handed alpha
Helix 5	AA5	E	104	108	Right-handed 310
Helix 6	AA6	E	127	142	Right-handed alpha
Helix 7	AA7	E	144	152	Right-handed alpha
Helix 8	AA8	F	104	108	Right-handed 310
Helix 9	AA9	F	132	154	Right-handed alpha
Helix 10	AB1	G	78	80	Right-handed 310
Helix 11	AB2	G	123	140	Right-handed alpha
Helix 12	AB3	M	211	215	Right-handed 310
Helix 13	AB4	M	258	287	Right-handed alpha
Helix 14	AB5	N	89	93	Right-handed 310
Helix 15	AB6	N	144	149	Right-handed alpha
Helix 16	AB7	N	254	261	Right-handed alpha
Helix 17	AB8	N	262	267	Right-handed alpha
Helix 18	AB9	N	272	285	Right-handed alpha
Helix 19	AC1	a	27	33	Right-handed alpha
Helix 20	AC2	a	38	56	Right-handed alpha
Helix 21	AC3	b	28	52	Right-handed alpha
Helix 22	AC4	d	107	126	Right-handed alpha
Helix 23	AC5	e	104	108	Right-handed 310
Helix 24	AC6	e	127	142	Right-handed alpha
Helix 25	AC7	e	144	152	Right-handed alpha
Helix 26	AC8	f	104	108	Right-handed 310
Helix 27	AC9	f	132	154	Right-handed alpha
Helix 28	AD1	g	78	80	Right-handed 310
Helix 29	AD2	g	123	140	Right-handed alpha
Helix 30	AD3	m	211	215	Right-handed 310
Helix 31	AD4	m	258	287	Right-handed alpha
Helix 32	AD5	n	89	93	Right-handed 310
Helix 33	AD6	n	144	149	Right-handed alpha
Helix 34	AD7	n	254	261	Right-handed alpha
Helix 35	AD8	n	262	267	Right-handed alpha
Helix 36	AD9	n	272	285	Right-handed alpha

There are 40 sheets in PDB entry 8JCB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	36	first strand
Strand 2	D	57	58	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	46	first strand
Strand 2	D	69	73	anti-parallel
Strand 3	D	84	91	anti-parallel
Strand 4	E	114	116	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	E	122	124	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	41	first strand
Strand 2	E	44	48	anti-parallel
Strand 3	E	81	84	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	60	first strand
Strand 2	E	65	66	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	41	first strand
Strand 2	F	44	48	anti-parallel
Strand 3	F	81	84	anti-parallel
Strand 4	F	76	77	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	58	first strand
Strand 2	F	99	100	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	114	first strand
Strand 2	G	97	100	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	122	124	first strand
Strand 2	G	107	109	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	34	first strand
Strand 2	G	41	46	anti-parallel
Strand 3	G	71	76	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	23	25	first strand
Strand 2	M	38	46	anti-parallel
Strand 3	M	93	99	anti-parallel
Strand 4	M	83	88	anti-parallel
Strand 5	M	79	80	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	30	34	first strand
Strand 2	M	130	135	parallel
Strand 3	M	107	113	anti-parallel
Strand 4	M	53	59	anti-parallel
Strand 5	M	65	72	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	30	34	first strand
Strand 2	M	130	135	parallel
Strand 3	M	107	113	anti-parallel
Strand 4	M	125	126	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	146	150	first strand
Strand 2	M	154	162	anti-parallel
Strand 3	M	192	199	anti-parallel
Strand 4	M	183	186	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	13	14	first strand
Strand 2	N	120	121	parallel
Strand 3	N	94	101	anti-parallel
Strand 4	N	35	41	anti-parallel
Strand 5	N	48	54	anti-parallel
Strand 6	N	59	61	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	13	14	first strand
Strand 2	N	120	121	parallel
Strand 3	N	94	101	anti-parallel
Strand 4	N	113	114	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	21	25	first strand
Strand 2	N	82	86	anti-parallel
Strand 3	N	71	74	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	152	153	first strand
Strand 2	N	200	201	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	156	159	first strand
Strand 2	N	193	197	anti-parallel
Strand 3	N	187	188	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	167	171	first strand
Strand 2	N	210	215	anti-parallel
Strand 3	N	228	229	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	35	36	first strand
Strand 2	d	57	58	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	42	46	first strand
Strand 2	d	69	73	anti-parallel
Strand 3	d	84	91	anti-parallel
Strand 4	e	114	116	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	96	98	first strand
Strand 2	e	122	124	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	38	41	first strand
Strand 2	e	44	48	anti-parallel
Strand 3	e	81	84	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	59	60	first strand
Strand 2	e	65	66	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	37	41	first strand
Strand 2	f	44	48	anti-parallel
Strand 3	f	81	84	anti-parallel
Strand 4	f	76	77	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	57	58	first strand
Strand 2	f	99	100	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	111	114	first strand
Strand 2	g	97	100	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	122	124	first strand
Strand 2	g	107	109	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	31	34	first strand
Strand 2	g	41	46	anti-parallel
Strand 3	g	71	76	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	23	25	first strand
Strand 2	m	38	46	anti-parallel
Strand 3	m	93	99	anti-parallel
Strand 4	m	83	88	anti-parallel
Strand 5	m	79	80	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	30	34	first strand
Strand 2	m	130	135	parallel
Strand 3	m	107	113	anti-parallel
Strand 4	m	53	59	anti-parallel
Strand 5	m	65	72	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	30	34	first strand
Strand 2	m	130	135	parallel
Strand 3	m	107	113	anti-parallel
Strand 4	m	125	126	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	146	150	first strand
Strand 2	m	154	162	anti-parallel
Strand 3	m	192	199	anti-parallel
Strand 4	m	183	186	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	13	14	first strand
Strand 2	n	120	121	parallel
Strand 3	n	94	101	anti-parallel
Strand 4	n	35	41	anti-parallel
Strand 5	n	48	54	anti-parallel
Strand 6	n	59	61	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	13	14	first strand
Strand 2	n	120	121	parallel
Strand 3	n	94	101	anti-parallel
Strand 4	n	113	114	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	21	25	first strand
Strand 2	n	82	86	anti-parallel
Strand 3	n	71	74	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	152	153	first strand
Strand 2	n	200	201	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	156	159	first strand
Strand 2	n	193	197	anti-parallel
Strand 3	n	187	188	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	167	171	first strand
Strand 2	n	210	215	anti-parallel
Strand 3	n	228	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JCB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JCB