Analysis of interatomic Contacts of Structural Units in PDB entry:
8JCQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JCQ entry

There are 2 chains in PDB entry 8JCQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 124GLY 323
A
 CYS 325ASP 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8JCQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
149 166Right-handed alpha
Helix 2
AA2
A
174 182Right-handed alpha
Helix 3
AA3
A
186 190Right-handed 310
Helix 4
AA4
A
192 204Right-handed alpha
Helix 5
AA5
A
239 248Right-handed alpha
Helix 6
AA6
A
259 264Right-handed alpha
Helix 7
AA7
A
323 327Right-handed 310
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There are 3 sheets in PDB entry 8JCQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
280 290anti-parallel
Strand 3
A
252 256anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
280 290anti-parallel
Strand 3
A
293 299anti-parallel
Strand 4
A
311 315anti-parallel
Strand 5
A
269 270parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 234first strand
Strand 2
A
332 335anti-parallel
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