Analysis of interatomic Contacts of Structural Units in PDB entry:
8JCS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JCS entry

There are 4 chains in PDB entry 8JCS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 129SER 151
A
 TRP 153TYR 339
B
 PRO 129SER 151
B
 TRP 153TYR 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8JCS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
135 138Right-handed 310
Helix 2
AA2
A
151 170Right-handed alpha
Helix 3
AA3
A
176 184Right-handed alpha
Helix 4
AA4
A
188 192Right-handed 310
Helix 5
AA5
A
194 206Right-handed alpha
Helix 6
AA6
A
241 250Right-handed alpha
Helix 7
AA7
A
262 267Right-handed alpha
Helix 8
AA8
A
326 330Right-handed 310
Helix 9
AA9
B
135 138Right-handed 310
Helix 10
AB1
B
151 170Right-handed alpha
Helix 11
AB2
B
176 184Right-handed alpha
Helix 12
AB3
B
188 192Right-handed 310
Helix 13
AB4
B
194 206Right-handed alpha
Helix 14
AB5
B
241 250Right-handed alpha
Helix 15
AB6
B
262 267Right-handed alpha
Helix 16
AB7
B
326 330Right-handed 310
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There are 6 sheets in PDB entry 8JCS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
283 293anti-parallel
Strand 3
A
254 258anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
283 293anti-parallel
Strand 3
A
296 302anti-parallel
Strand 4
A
314 318anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
335 338anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 133first strand
Strand 2
B
283 293anti-parallel
Strand 3
B
254 258anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 133first strand
Strand 2
B
283 293anti-parallel
Strand 3
B
296 302anti-parallel
Strand 4
B
314 318anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 236first strand
Strand 2
B
335 338anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il