Analysis of interatomic Contacts of Structural Units in PDB entry:
8JCU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JCU entry

There are 2 chains in PDB entry 8JCU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
2
 ALA 22PHE 819
3
 ARG 30ILE 826
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8JCU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
2
58 74Right-handed alpha
Helix 2
AA2
2
94 102Right-handed alpha
Helix 3
AA3
2
104 110Right-handed alpha
Helix 4
AA4
2
144 157Right-handed alpha
Helix 5
AA5
2
169 173Right-handed 310
Helix 6
AA6
2
189 202Right-handed alpha
Helix 7
AA7
2
218 230Right-handed alpha
Helix 8
AA8
2
246 259Right-handed alpha
Helix 9
AA9
2
271 286Right-handed alpha
Helix 10
AB1
2
324 333Right-handed alpha
Helix 11
AB2
2
344 353Right-handed alpha
Helix 12
AB3
2
377 400Right-handed alpha
Helix 13
AB4
2
414 423Right-handed alpha
Helix 14
AB5
2
485 489Right-handed 310
Helix 15
AB6
2
568 589Right-handed alpha
Helix 16
AB7
2
595 601Right-handed alpha
Helix 17
AB8
2
602 625Right-handed alpha
Helix 18
AB9
2
630 659Right-handed alpha
Helix 19
AC1
2
676 699Right-handed alpha
Helix 20
AC2
2
725 749Right-handed alpha
Helix 21
AC3
2
755 784Right-handed alpha
Helix 22
AC4
2
786 807Right-handed alpha
Helix 23
AC5
2
809 819Right-handed alpha
Helix 24
AC6
3
66 82Right-handed alpha
Helix 25
AC7
3
101 110Right-handed alpha
Helix 26
AC8
3
111 117Right-handed 310
Helix 27
AC9
3
150 163Right-handed alpha
Helix 28
AD1
3
175 180Right-handed 310
Helix 29
AD2
3
195 208Right-handed alpha
Helix 30
AD3
3
221 237Right-handed alpha
Helix 31
AD4
3
252 265Right-handed alpha
Helix 32
AD5
3
277 292Right-handed alpha
Helix 33
AD6
3
330 339Right-handed alpha
Helix 34
AD7
3
350 360Right-handed alpha
Helix 35
AD8
3
389 412Right-handed alpha
Helix 36
AD9
3
420 425Right-handed alpha
Helix 37
AE1
3
426 433Right-handed alpha
Helix 38
AE2
3
434 438Right-handed 310
Helix 39
AE3
3
574 601Right-handed alpha
Helix 40
AE4
3
610 633Right-handed alpha
Helix 41
AE5
3
639 665Right-handed alpha
Helix 42
AE6
3
683 700Right-handed alpha
Helix 43
AE7
3
702 707Right-handed alpha
Helix 44
AE8
3
733 758Right-handed alpha
Helix 45
AE9
3
764 792Right-handed alpha
Helix 46
AF1
3
796 826Right-handed alpha
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There are 9 sheets in PDB entry 8JCU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
26 28first strand
Strand 2
2
84 90anti-parallel
Strand 3
2
32 38parallel
Strand 4
2
136 141parallel
Strand 5
2
162 164parallel
Strand 6
2
181 183parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
41 43first strand
Strand 2
2
50 53anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
234 239first strand
Strand 2
2
206 210parallel
Strand 3
2
265 268parallel
Strand 4
2
290 293parallel
Strand 5
2
315 319parallel
Strand 6
2
453 460anti-parallel
Strand 7
2
466 474anti-parallel
Strand 8
2
478 480anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
428 429first strand
Strand 2
2
440 441anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
32 33first strand
Strand 2
3
91 97anti-parallel
Strand 3
3
39 45parallel
Strand 4
3
142 147parallel
Strand 5
3
168 170parallel
Strand 6
3
187 189parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
48 50first strand
Strand 2
3
57 60anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
240 247first strand
Strand 2
3
212 218parallel
Strand 3
3
271 274parallel
Strand 4
3
296 299parallel
Strand 5
3
321 325parallel
Strand 6
3
465 473anti-parallel
Strand 7
3
478 487anti-parallel
Strand 8
3
490 492anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
361 362first strand
Strand 2
3
371 372parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
440 441first strand
Strand 2
3
453 454anti-parallel
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