Analysis of interatomic Contacts of Structural Units in PDB entry:
8JCV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JCV entry

There are 2 chains in PDB entry 8JCV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
2
 ALA 22LEU 818
3
 ARG 30ILE 825
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8JCV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
2
58 75Right-handed alpha
Helix 2
AA2
2
94 103Right-handed alpha
Helix 3
AA3
2
104 106Right-handed 310
Helix 4
AA4
2
145 159Right-handed alpha
Helix 5
AA5
2
170 174Right-handed 310
Helix 6
AA6
2
189 202Right-handed alpha
Helix 7
AA7
2
218 231Right-handed alpha
Helix 8
AA8
2
246 260Right-handed alpha
Helix 9
AA9
2
271 285Right-handed alpha
Helix 10
AB1
2
300 305Right-handed alpha
Helix 11
AB2
2
324 332Right-handed alpha
Helix 12
AB3
2
344 353Right-handed alpha
Helix 13
AB4
2
360 364Right-handed 310
Helix 14
AB5
2
375 377Right-handed 310
Helix 15
AB6
2
378 400Right-handed alpha
Helix 16
AB7
2
407 411Right-handed 310
Helix 17
AB8
2
414 422Right-handed alpha
Helix 18
AB9
2
423 426Right-handed 310
Helix 19
AC1
2
482 485Right-handed 310
Helix 20
AC2
2
568 592Right-handed alpha
Helix 21
AC3
2
595 601Right-handed alpha
Helix 22
AC4
2
602 623Right-handed alpha
Helix 23
AC5
2
631 660Right-handed alpha
Helix 24
AC6
2
676 702Right-handed alpha
Helix 25
AC7
2
723 749Right-handed alpha
Helix 26
AC8
2
757 784Right-handed alpha
Helix 27
AC9
2
786 818Right-handed alpha
Helix 28
AD1
3
65 82Right-handed alpha
Helix 29
AD2
3
101 109Right-handed alpha
Helix 30
AD3
3
109 115Right-handed alpha
Helix 31
AD4
3
150 164Right-handed alpha
Helix 32
AD5
3
176 180Right-handed 310
Helix 33
AD6
3
194 208Right-handed alpha
Helix 34
AD7
3
220 238Right-handed alpha
Helix 35
AD8
3
252 265Right-handed alpha
Helix 36
AD9
3
277 290Right-handed alpha
Helix 37
AE1
3
330 339Right-handed alpha
Helix 38
AE2
3
349 360Right-handed alpha
Helix 39
AE3
3
380 384Right-handed 310
Helix 40
AE4
3
389 412Right-handed alpha
Helix 41
AE5
3
426 433Right-handed alpha
Helix 42
AE6
3
577 601Right-handed alpha
Helix 43
AE7
3
614 632Right-handed alpha
Helix 44
AE8
3
639 665Right-handed alpha
Helix 45
AE9
3
685 706Right-handed alpha
Helix 46
AF1
3
732 759Right-handed alpha
Helix 47
AF2
3
764 791Right-handed alpha
Helix 48
AF3
3
797 825Right-handed alpha
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There are 10 sheets in PDB entry 8JCV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
26 27first strand
Strand 2
2
84 89anti-parallel
Strand 3
2
32 37parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
162 164first strand
Strand 2
2
181 183parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
234 235first strand
Strand 2
2
206 210parallel
Strand 3
2
265 268parallel
Strand 4
2
290 293parallel
Strand 5
2
315 319parallel
Strand 6
2
453 458anti-parallel
Strand 7
2
468 474anti-parallel
Strand 8
2
478 480anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
428 429first strand
Strand 2
2
440 441anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
32 35first strand
Strand 2
3
91 97anti-parallel
Strand 3
3
39 45parallel
Strand 4
3
144 147parallel
Strand 5
3
168 170parallel
Strand 6
3
188 189parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
48 50first strand
Strand 2
3
57 60anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
240 247first strand
Strand 2
3
212 218parallel
Strand 3
3
271 275parallel
Strand 4
3
296 298parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
321 325first strand
Strand 2
3
466 474anti-parallel
Strand 3
3
477 486anti-parallel
Strand 4
3
490 492anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
440 441first strand
Strand 2
3
453 454anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
518 521first strand
Strand 2
3
530 533anti-parallel
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