Analysis of interatomic Contacts of Structural Units in PDB entry:
8JCW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JCW entry

There are 2 chains in PDB entry 8JCW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
2
 LYS 24LEU 818
3
 ARG 30ILE 826
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8JCW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
2
44 48Right-handed 310
Helix 2
AA2
2
58 74Right-handed alpha
Helix 3
AA3
2
94 107Right-handed alpha
Helix 4
AA4
2
144 157Right-handed alpha
Helix 5
AA5
2
169 173Right-handed 310
Helix 6
AA6
2
189 202Right-handed alpha
Helix 7
AA7
2
214 230Right-handed alpha
Helix 8
AA8
2
246 259Right-handed alpha
Helix 9
AA9
2
271 285Right-handed alpha
Helix 10
AB1
2
324 333Right-handed alpha
Helix 11
AB2
2
344 354Right-handed alpha
Helix 12
AB3
2
377 400Right-handed alpha
Helix 13
AB4
2
414 422Right-handed alpha
Helix 14
AB5
2
569 592Right-handed alpha
Helix 15
AB6
2
593 595Right-handed 310
Helix 16
AB7
2
602 624Right-handed alpha
Helix 17
AB8
2
630 659Right-handed alpha
Helix 18
AB9
2
676 701Right-handed alpha
Helix 19
AC1
2
724 748Right-handed alpha
Helix 20
AC2
2
755 784Right-handed alpha
Helix 21
AC3
2
787 818Right-handed alpha
Helix 22
AC4
3
65 81Right-handed alpha
Helix 23
AC5
3
101 109Right-handed alpha
Helix 24
AC6
3
109 114Right-handed alpha
Helix 25
AC7
3
115 117Right-handed 310
Helix 26
AC8
3
150 162Right-handed alpha
Helix 27
AC9
3
175 180Right-handed 310
Helix 28
AD1
3
194 208Right-handed alpha
Helix 29
AD2
3
221 237Right-handed alpha
Helix 30
AD3
3
254 265Right-handed alpha
Helix 31
AD4
3
279 291Right-handed alpha
Helix 32
AD5
3
330 339Right-handed alpha
Helix 33
AD6
3
350 359Right-handed alpha
Helix 34
AD7
3
389 412Right-handed alpha
Helix 35
AD8
3
419 423Right-handed 310
Helix 36
AD9
3
426 435Right-handed alpha
Helix 37
AE1
3
578 601Right-handed alpha
Helix 38
AE2
3
611 632Right-handed alpha
Helix 39
AE3
3
637 664Right-handed alpha
Helix 40
AE4
3
682 707Right-handed alpha
Helix 41
AE5
3
717 721Right-handed 310
Helix 42
AE6
3
731 733Right-handed 310
Helix 43
AE7
3
734 756Right-handed alpha
Helix 44
AE8
3
764 792Right-handed alpha
Helix 45
AE9
3
796 826Right-handed alpha
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There are 12 sheets in PDB entry 8JCW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
84 90first strand
Strand 2
2
32 38parallel
Strand 3
2
136 141parallel
Strand 4
2
162 164parallel
Strand 5
2
181 183parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
234 240first strand
Strand 2
2
206 211parallel
Strand 3
2
265 269parallel
Strand 4
2
290 293parallel
Strand 5
2
315 319parallel
Strand 6
2
453 459anti-parallel
Strand 7
2
467 474anti-parallel
Strand 8
2
478 480anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
428 429first strand
Strand 2
2
440 441anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
508 511first strand
Strand 2
2
521 524anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
529 530first strand
Strand 2
2
538 539anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
33 34first strand
Strand 2
3
91 97anti-parallel
Strand 3
3
39 45parallel
Strand 4
3
142 146parallel
Strand 5
3
168 170parallel
Strand 6
3
187 189parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
48 50first strand
Strand 2
3
57 60anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
240 246first strand
Strand 2
3
212 217parallel
Strand 3
3
271 275parallel
Strand 4
3
296 299parallel
Strand 5
3
321 325parallel
Strand 6
3
466 473anti-parallel
Strand 7
3
478 486anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
440 441first strand
Strand 2
3
453 454anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
518 521first strand
Strand 2
3
530 533anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
538 539first strand
Strand 2
3
547 548anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
554 555first strand
Strand 2
3
562 563anti-parallel
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